Job Description P24218 Confidence 100.00% Date Thu Jan 5 11:41:20 GMT 2012 Rank 1 Aligned Residues 310 % Identity 17% Template c1z1bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Resolution 3.80 Å

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		3	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure						.																																																.	.	.	.	.	.	.																			.	.	.
Query SS confidence						.																																																.	.	.	.	.	.	.																			.	.	.
Query Sequence		L	F	R	R	.	N	E	I	W	Y	A	S	Y	S	L	P	G	G	K	R	I	K	E	S	L	G	T	K	D	K	R	Q	A	Q	E	L	H	D	K	R	K	A	E	L	W	R	V	E	K	L	G	D	.	.	.	.	.	.	.	L	P	D	V	T	F	E	E	A	C	L	R	W	L	E	E	K	A	.	.	.
Query Conservation						.																																																.	.	.	.	.	.	.																			.	.	.
Alig confidence						.											.									.	.	.																										.	.	.	.	.	.	.																			.	.	.
Template Conservation																	.									.	.	.
Template Sequence		L	Y	I	R	N	N	G	Y	Y	C	Y	R	D	P	R	.	T	G	K	E	F	G	L	G	.	.	.	R	D	R	R	I	A	I	T	E	A	I	Q	A	N	I	E	L	F	S	G	H	K	H	K	P	L	T	A	R	I	N	S	D	N	S	V	T	L	H	S	W	L	D	R	Y	E	K	I	L	A	S	R	G
Template Known Secondary structure						T	T	T							T	T	.	T								.	.	.	S																																		S		B														T	T	T
Template Predicted Secondary structure																	.									.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.				.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
			72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	K	K	S	L	D	S	D	K	S	R	I	E	F	W	L	E	H	F	E	G	I	R	L	K	D	I	S	E	A	K	I	Y	S	A	V	S	R	M	H	N	R	K	T	K	E	I	W	K	Q	K	V	Q	A	A	I	R	K	G	K	E	L	P	V	Y	E	P	K	P	V	S	T	Q	T	K	A	K	H	L
Query Conservation		.
Alig confidence		.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	Q	K	T	L	I	N	Y	M	S	K	I	K	A	I	R	R	G	L	P	D	A	P	L	E	D	I	T	T	K	E	I	A	A	M	L	N	G	Y	I	D	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	A	S	A	K	L	I	R
Template Known Secondary structure																					S		S		B	G	G	G																T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.																												.	.	.	.	140	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		A	M	I	K	A	I	L	R	A	A	E	R	D	W	K	W	L	E	K	A	P	V	I	K	I	P	A	V	R	N	K	R	V	R	W	L	E	K	E	E	A	K	R	L	I	D	E	C	.	.	.	P	E	P	L	K	S	V	V	K	F	A	L	A	T	G	L	R	K	S	N	I	I	N	L	E	W	Q	Q	I
Query Conservation																																																		.	.	.
Alig confidence																																																		.	.	.
Template Conservation
Template Sequence		S	T	L	S	D	A	F	R	E	A	I	A	E	G	H	I	T	T	N	H	V	A	A	T	R	A	A	K	S	K	V	R	R	S	R	L	T	A	D	E	Y	L	K	I	Y	Q	A	A	E	S	S	P	C	W	L	R	L	A	M	E	L	A	V	V	T	G	Q	R	V	G	D	L	C	E	M	K	W	S	D	I
Template Known Secondary structure														T	T	S		S	S		T	T	T	T	S									B															T	T	S	S																						T	T		B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	Q	R	R	V	A	W	V	N	P	E	E	S	K	S	N	R	A	I	G	V	A	L	N	D	T	A	C	K	V	L	R	D	Q	I	G	K	H	H	K	W	V	F	V	H	T	K	A	A	K	R	A	D	G	T	S	T	P	A	V	R	K	M	R	I	D	S	K	T	S	W	L	S	A	C	R	R	A	G
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.
Template Sequence		V	D	G	Y	L	Y	V	E	Q	S	K	T	G	V	K	I	A	I	P	T	A	L	H	I	D	A	L	G	I	S	M	K	E	T	L	D	K	C	K	E	.	.	.	.	.	.	.	I	L	G	G	E	T	I	I	A	S	T	R	R	E	P	L	S	S	G	T	V	S	R	Y	F	M	R	A	R	K	A	S	G
Template Known Secondary structure			T	T							T	T	T								T	T				T	T	T	T													.	.	.	.	.	.	.		T		S	S	B	S	S			T	T	S																				T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.								.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		308	.					310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure				.	.	.	.
Query SS confidence				.	.	.	.
Query Sequence		I	E	.	.	.	.	D	F	R	F	H	D	L	R	H	T	W	A	S	W	L	I	Q	S	G	V	P	L	S	V	L	Q	E	M	G	G	W	E	S	I	E	M	V	R	R	Y	A	H
Query Conservation				.	.	.	.
Alig confidence				.	.	.	.										.
Template Conservation																	.
Template Sequence		L	S	F	E	G	D	P	P	T	F	H	E	L	R	S	.	L	S	A	R	L	Y	E	K	Q	I	S	D	K	F	A	Q	H	L	L	G	H	K	S	D	T	M	A	S	Q	R	D	D
Template Known Secondary structure					S	S	B				T	T					.										T										T		S	S					T
Template Predicted Secondary structure																	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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