Job Description P24218 Confidence 99.97% Date Thu Jan 5 11:41:20 GMT 2012 Rank 2 Aligned Residues 283 % Identity 14% Template c1ma7A_ PDB info PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 Resolution 2.30 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																.	.	.	.	.																					.	.
Query SS confidence																.	.	.	.	.																					.	.
Query Sequence		T	F	E	E	A	C	L	R	W	L	E	E	K	A	.	.	.	.	.	D	K	K	S	L	D	S	D	K	S	R	I	E	F	W	L	E	H	F	E	.	.	G	I	R	L	K	D	I	S	E	A	K	I	Y	S	A	V	S	R	M	H	N	R	K	T	K	E	I	W	K	Q	K	V	Q	A	A	I	R	K	G
Query Conservation																.	.	.	.	.																					.	.
Alig confidence																.	.	.	.	.																					.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	S	D	E	V	R	K	N	L	M	D	M	F	R	D	R	Q	A	F	S	E	H	T	W	K	M	L	L	S	V	C	R	S	W	A	A	W	C	K	L	N	N	R	K	W	F	P	A	E	P	E	D	V	R	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																T	G	G	G	S																						T	T				S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.										.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.																											.
Query SS confidence																																														.	.	.	.	.	.	.	.	.																											.
Query Sequence		K	E	L	P	V	Y	E	P	K	P	V	S	T	Q	T	K	A	K	H	L	A	M	I	K	A	I	L	R	A	A	E	R	D	W	K	W	L	E	K	A	P	V	I	K	.	.	.	.	.	.	.	.	.	I	P	A	V	R	N	K	R	V	R	W	L	E	K	E	E	A	K	R	L	I	D	E	C	P	E	.
Query Conservation																																														.	.	.	.	.	.	.	.	.																											.
Alig confidence		.	.																																											.	.	.	.	.	.	.	.	.																											.
Template Conservation		.	.
Template Sequence		.	.	L	L	Y	L	Q	A	R	G	L	A	V	K	T	I	Q	Q	H	L	G	Q	L	N	M	L	H	R	R	S	G	L	P	R	P	S	D	S	N	A	V	S	L	V	M	R	R	I	R	K	E	N	V	D	A	G	E	R	A	K	Q	A	L	A	F	E	R	T	D	F	D	Q	V	R	S	L	M	E	N	S
Template Known Secondary structure		.	.						T	T	T																			T	T	T	S			G	G	G	S																T	T	T																						T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
								201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																										.	.	.	.																													.
Query SS confidence		.	.	.	.	.	.																																										.	.	.	.																													.
Query Sequence		.	.	.	.	.	.	P	L	K	S	V	V	K	F	A	L	A	T	G	L	R	K	S	N	I	I	N	L	E	W	Q	Q	I	D	M	Q	R	R	V	A	W	V	N	P	E	E	S	.	.	.	.	K	S	N	R	A	I	G	V	A	L	N	D	T	A	C	K	V	L	R	D	Q	I	G	K	H	H	K	W	.
Query Conservation		.	.	.	.	.	.																																										.	.	.	.																													.
Alig confidence		.	.	.	.	.	.																																										.	.	.	.																													.
Template Conservation
Template Sequence		D	R	C	Q	D	I	R	N	L	A	F	L	G	I	A	Y	N	T	L	L	R	I	A	E	I	A	R	I	R	V	K	D	I	S	R	T	D	G	G	R	M	L	I	H	I	G	R	T	K	T	L	V	S	T	A	G	V	E	K	A	L	S	L	G	V	T	K	L	V	E	R	W	I	S	V	S	G	V	A	D
Template Known Secondary structure																							S					S		B	S	S	S			S	T	T	T	T	S										S	S	S	S		S								T	T															S	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
					270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.										.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																								.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																								.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	V	F	V	H	T	K	A	A	K	R	A	D	G	T	S	T	P	A	V	R	K	M	R	I	D	S	K	T	S	W	L	S	A	C	R	R	A	G	I	.	.	.	.	.	.	.	.	.	E	D	F	R	F	H	D	L	R	H	T	W	A	S	W	L	I	Q	S	G	V	P	L	S	V	L	Q	E	M
Query Conservation		.	.	.																																								.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	N	N	Y	L	F	C	R	V	R	K	N	G	V	A	A	P	S	A	T	S	Q	L	S	T	R	A	L	E	G	I	F	E	A	T	H	R	L	I	Y	G	A	K	D	D	S	G	Q	R	Y	L	A	W	S	G	H	S	A	R	V	G	A	A	R	D	M	A	R	A	G	V	S	I	P	E	I	M	Q	A
Template Known Secondary structure		S	T	T	S	B	S				B		T	T	S		B				S	S																				T		S				S	S		S		S	S			T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	W	E	S	I	E	M	V	R	R	Y	A	H	L	A	P	N	H	L	T	E	H	A	R	K	I	D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	W	T	N	V	N	I	V	M	N	Y	I	R	N	L	D	S	E	T	G	A	M	V	R	L	L	E	D
Template Known Secondary structure			T		S		S								T	T		G	G	G									T
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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