Return to main results Retrieve Phyre Job Id

Job DescriptionP0AAG8
Confidence100.00%DateThu Jan 5 11:12:53 GMT 2012
Rank6Aligned Residues460
% Identity20%Templatec3pihA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50...... ...60.........70.
Predicted Secondary structure 











.............







........................
Query SS confidence 



























. . . . . . . . . . . . .














. . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  LDNVNLKVRPHSIHALMGENGAGKSTLL. . . . . . . . . . . . . KCLFGIYQKDSGTIL. . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation 
  

  
  

   


 








.............  
 
      
 
 ........................
Alig confidence 



























.............














........................
Template Conservation 

 
   

       

 












  

 
   
  
    
 

 
 

 
 
 
 
      





 
Template Sequence  LKNITVRIPKNRLVVITGVSGSGKSSLAMDTIYAEGQRRYLESLSTYKKPDVDEIEGLSPAIAIDQKTSHNPRSTVGTVT
Template Known Secondary structure 

SB

TTSSTTSSSTTTTTS





S
ST



S



STT
BT
Template Predicted Secondary structure 



































Template SS confidence 















































































   14.....20.........30.........40.........50.........60.........70.........80.........90...
 
   72.......80........
Predicted Secondary structure  ...................







............................................
Query SS confidence  . . . . . . . . . . . . . . . . . . .
















. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . FQGKEIDFHSAKEALEN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ...................  
              ............................................
Alig confidence  ...................
















............................................
Template Conservation   
   

 
 

 
   

                                  
  
                       
Template Sequence  EIYDYLRVLYARIGKAHCPECGRPLEKKSIDEILQDLFNSFKEGSRIYILAPLVVDRLILETRNEHRILDSLELAMREGK
Template Known Secondary structure  TS
B
TTT

B
B


S
TT







GGGT
Template Predicted Secondary structure 


























Template SS confidence 















































































   103......110.........120.........130.........140.........150.........160.........170.........180..
 
  
Predicted Secondary structure  ................................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                      

 
   
 
  
 
 
     
                     
Template Sequence  GFVEIRNVDTGESKIFSENLMCPVCGIGFPEITPKLFSFNSPYGACPNCHGLGFTFEVDPSLVAIIPYRWDRRLSRWVAR
Template Known Secondary structure  STTT

SS
B
TTT






SGGGG
TTSTTTB
TTTTTSS
S




GGGTT
Template Predicted Secondary structure 

















































Template SS confidence 















































































   231........240.........250.........260.........270.........280.........290.........300.........310
 
   8990.........100...
Predicted Secondary structure  .................................................................










Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .














Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GISMVHQELNLVLQR
Query Conservation  ................................................................. 
  
 
        
Alig confidence  .................................................................














Template Conservation                         
                           
  
 
 

        
 
  
      
Template Sequence  EIEKRGVSPPEDVKEFILYGDFEGVVPKVQRWHRETEMKEWLEKNFIVQRTCSVCGGRRLNREALSVKINGLNIHEFTEL
Template Known Secondary structure  TTTT




S
T








TT
TTT
S

B
TTGGGTTS
Template Predicted Secondary structure 




































Template SS confidence 















































































   321........330.........340.........350.........360.........370.........380.........390.........400
 
   104.....110.........120... ......130.........140.. .......150.........160......... 170....
Predicted Secondary structure 





......



.









..
Query SS confidence 



















. . . . . .


















.


























. .




Query Sequence  SVMDNMWLGRYPTKGMFVDQ. . . . . . DKMYRETKAIFDELDIDID. PRARVGTLSVSQMQMIEIAKAFSYNAK. . IVIMD
Query Conservation 

 
                ......               
   .    
  




 


 

 

   
 ..




Alig confidence 



















......








.








.


























..




Template Conservation             
                
  

  .
  


  
 
 
   









 

 

 
 
   




Template Sequence  SISEELEFLKNLNLTEREREIVGELLKEIEKRLEF. LVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLD
Template Known Secondary structure  BS



TTTTTT.TTT
TT
BTTSBGGG

TT

S
Template Predicted Secondary structure 




.




















Template SS confidence 















































































   413......420.........430.........440....... ..450.........460.........470.........480.........490.
 
   175....180.........190.........200.........210.........220.. .......230.........240........
Predicted Secondary structure 













......













Query SS confidence 















































. . . . . .

























Query Sequence  EPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEVTVL. . . . . . RDGQWIATEPLAGLTMDKIIAMMVGR
Query Conservation 


  

      
   
  
   
 


 


    
    
 
  
......  
  
                    
Alig confidence 





































.








......

























Template Conservation 



 

      
   
  
   
 







   
.  

 

 
  
    

 

  
             
   
Template Sequence  EPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVI. RNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEY
Template Known Secondary structure 
TTTT

GGGTTTTT



.T
SSSSGGG
S
S
TT
Template Predicted Secondary structure 








.










Template SS confidence 















































































   492.......500.........510.........520......... 530.........540.........550.........560.........570
 
   249250.........260.........270.........280.........290.........300...... ...310.........320.......
Predicted Secondary structure 
































.











Query SS confidence 

























































.




















Query Sequence  SLNQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIV. ETLFGIREKSAGTITLHGKQI
Query Conservation                   
    
       
  


 
  

   


 








.  
 
      
 
   
   
Alig confidence 















.








































.




















Template Conservation                  .             
  
   
  
   

 
 








   
   
              
Template Sequence  LSGKRKITVNKTRRLP. YASLKIKGVRHNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEF
Template Known Secondary structure  SSS




SS



.SS
STT

SSSS
STTSST








Template Predicted Secondary structure 










.





























Template SS confidence 















































































   571........580...... ...590.........600.........610.........620.........630.........640.........
 
   328.330.........340......
Predicted Secondary structure 








.............................................................
Query SS confidence 


















. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  NNHNANEAINHGFALVTEE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation              
  
 
 .............................................................
Alig confidence 






.










.............................................................
Template Conservation         .    
  
 
 

    

         
 

 

     
          
 
   
      
 
     
Template Sequence  DSIEGHE. NIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIE
Template Known Secondary structure  S
GG.G


S





TT

SSTTSSS

GGGG
TTSTTTB
TTTTTSS
Template Predicted Secondary structure 



.









































Template SS confidence 















































































   650...... ...660.........670.........680.........690.........700.........710.........720........
 
   347..350.........360.........370.........380.........390.........400.........
Predicted Secondary structure  .................






















Query SS confidence  . . . . . . . . . . . . . . . . .






























































Query Sequence  . . . . . . . . . . . . . . . . . RRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSG
Query Conservation  .................     
        
                            
    
        
  


Alig confidence  .................






























































Template Conservation     
           
 
     
 
      
   
  

 

             
  
  


    
      


Template Sequence  MLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSG
Template Known Secondary structure 
TTS


TTTTTS
B
TTGGG

BTTB
SSBTTT
TTGGGSBTT

STT

Template Predicted Secondary structure 






























Template SS confidence 















































































   729730.........740.........750.........760.........770.........780.........790.........800........
 
   410.........420...... ...430.........440.........450.........460.........470......... 480
Predicted Secondary structure 



...













......
Query SS confidence 
















. . .




















































. . . . . .
Query Sequence  GNQQKVIIGRWLLTQPE. . . ILMLDEPTRGIDVGAKFEIYQLIAELAKKGKGIIIISSEMPELLGITDRILVM. . . . . . S
Query Conservation 





 




   
 ...








 

      
   
      
 







       



  
...... 
Alig confidence 
















...












































.






......
Template Conservation 





 

 

   
    











  
   
   
  
   
 








  
  .

 

 


  
  
Template Sequence  GEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN. ADHIIDLGPEGGKE
Template Known Secondary structure  TS


SSSTTTT

TT



TT.
SSSSGGG
Template Predicted Secondary structure 

















.








Template SS confidence 















































































   809810.........820.........830.........840.........850.........860.........870... ......880.......
 
   481........490...
Predicted Secondary structure 


Query SS confidence 












Query Sequence  NGLVSGIVDTKTT
Query Conservation   
 
       
 
Alig confidence 












Template Conservation   
 

  


 

Template Sequence  GGYIVATGTPEEI
Template Known Secondary structure 

S
Template Predicted Secondary structure 



Template SS confidence 












   888.890.........900
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions