Job Description P0AAG8 Confidence 99.31% Date Thu Jan 5 11:12:53 GMT 2012 Rank 78 Aligned Residues 279 % Identity 13% Template c3cmvG_ PDB info PDB header:recombination Chain: G: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures Resolution 4.30 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	L	K	V	R	P	H	S	I	H	A	L	M	G	E	N	G	A	G	K	S	T	L	L	K	C	L	F	G	I	Y	Q	K	D	S	G	T	I	L	F	Q	G	K	E	I	D	F	H	S	A	K	E	A	L	E	N	G	I	S	M	V	H	Q	E	L	N	L	V	L	Q	R	S	V	M	D	N	M	W	L
Query Conservation
Alig confidence																																												.	.	.
Template Conservation																																												.	.	.
Template Sequence		G	A	G	G	L	P	M	G	R	I	V	E	I	Y	G	P	E	S	S	G	K	T	T	L	T	L	Q	V	I	A	A	A	Q	R	E	G	K	T	C	A	F	I	.	.	.	D	A	E	H	A	L	D	P	I	Y	A	R	K	L	G	V	D	I	D	N	L	L	C	S	Q	P	D	T	G	E	Q	A	L	E	I
Template Known Secondary structure		S	S	S	S			T	T	S							S	T	T	S	S														T	T	T							.	.	.		S	S												T			G	G	G							S
Template Predicted Secondary structure																																												.	.	.
Template SS confidence
		1052	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.				.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.																					120	.	.	.	.	.	.	.	.	.	130	.	.	.																					.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query Sequence		G	R	Y	P	T	K	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	D	Q	D	K	M	Y	R	E	T	K	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	E	L	D	I	D	I	D	.	P	R	A	R	V	G	T	L
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation
Template Sequence		C	D	A	L	A	R	S	G	A	V	D	V	I	V	V	D	S	V	A	A	L	T	P	K	A	E	I	E	G	L	A	A	R	M	M	S	Q	A	M	R	K	L	A	G	N	L	K	Q	S	N	T	L	L	I	F	I	N	Q	G	G	N	A	L	K	F	Y	A	S	V	R	L	D	I	R	R	I	G	A	V	K
Template Known Secondary structure							T	T	S	S									G	G	G											T	T																T	T	T											T	T						S
Template Predicted Secondary structure
Template SS confidence
		1129	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																				.	.																																																							.	.	.	.	.	.
Query SS confidence																				.	.																																																							.	.	.	.	.	.
Query Sequence		S	V	S	Q	M	Q	M	I	E	I	A	K	A	F	S	Y	N	A	.	.	K	I	V	I	M	D	E	P	T	S	S	L	T	E	K	E	V	N	H	L	F	T	I	I	R	K	L	K	E	R	G	C	G	I	V	Y	I	S	H	K	M	E	E	I	F	Q	L	C	D	E	V	T	V	L	.	.	.	.	.	.
Query Conservation																				.	.																																																							.	.	.	.	.	.
Alig confidence																				.	.											.																					.	.	.	.						.														.	.	.	.	.	.
Template Conservation																																.																					.	.	.	.						.
Template Sequence		E	G	E	N	V	V	G	S	E	T	R	V	K	V	V	K	N	K	I	A	A	P	F	K	Q	A	E	F	Q	I	.	L	Y	G	E	G	I	N	F	Y	G	E	L	V	D	L	G	V	K	E	K	.	.	.	.	L	I	E	K	A	.	G	A	W	Y	S	Y	K	G	E	K	I	G	Q	G	K	A	N	A	T
Template Known Secondary structure			T	T															S	S	S		T	T								.		T	T	T															T	T	.	.	.	.	S	S				.	T	T					T	T
Template Predicted Secondary structure																																.																					.	.	.	.						.
Template SS confidence
		1233	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.		.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.					.	.	.	.	.		.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.													.	.	.	.	290
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	D	G	Q	W	I	A	T	E	P	L	A	G	L	T	M	D	K	I	I	A	M	M	V	G	R	S	L	N	Q	R	F	P	D	K	E	N	K	P	G	E	V	I	L	E	V	R	N	L	T	S	L	R	Q	P	S	I	R	D	V	S	F	D	.	.	.	.	.	.	.	.	.	.	.	.	L	H	K	G	E
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.
Template Sequence		A	W	L	K	D	N	P	E	T	A	K	E	I	E	K	K	V	R	E	L	L	L	K	Q	K	A	L	A	A	A	L	G	Q	I	E	K	Q	F	G	K	G	S	I	M	R	L	G	E	D	R	S	M	D	.	.	.	V	E	T	I	S	T	G	S	L	S	L	D	I	A	L	G	A	G	G	L	P	M	G	R
Template Known Secondary structure					T	T	S																																S	S	T	T					T	T							.	.	.							S									S	S	S	S			T	T	S
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		1307	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.				1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	G	I	A	G	L	V	G	A	K	R	T	D	I	V	E	T	L	F	G	I	R	E	K	S	A	G	T	I	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	E	I	Y	G	P	E	S	S	G	K	T	T	L	T	L	Q	V	I	A	A	A	Q	R	E	G	K	T	C	A	F
Template Known Secondary structure								S	T	T	S	S														T	S	S
Template Predicted Secondary structure
Template SS confidence
		2061	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions