Job Description P0AAG8 Confidence 100.00% Date Thu Jan 5 11:12:53 GMT 2012 Rank 7 Aligned Residues 426 % Identity 16% Template c2vf7B_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans Resolution 2.30 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.										.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.
Query Sequence		G	E	N	G	A	G	K	S	T	L	L	K	C	L	F	G	I	.	.	.	.	.	.	.	.	.	Y	Q	K	D	S	G	T	I	L	F	Q	G	K	E	I	D	F	H	S	A	K	E	A	L	E	N	G	I	S	M	V	H	Q	E	L	N	L	V	L	Q	R	S	V	M	D	N	M	W	L	G	R	Y	P	T
Query Conservation																			.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.																							.															.
Template Conservation																																																		.															.
Template Sequence		T	E	S	A	S	M	K	K	R	V	Q	G	Y	M	I	S	E	E	C	P	L	C	H	G	K	R	L	R	Q	E	A	L	N	V	T	F	A	G	L	D	I	T	E	L	S	R	L	P	.	L	A	R	V	S	E	L	L	R	P	Y	A	E	E	.	R	E	P	G	H	A	E	R	V	K	N	R	P	E	Q	A
Template Known Secondary structure													T	T							T	T	T	T	T	S		B						T		B	B	T	T	B						T	T	S	B	.														T	.		S	T	T
Template Predicted Secondary structure																																																		.															.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																												.																												.	.
Query SS confidence																												.																												.	.
Query Sequence		K	G	M	F	V	D	Q	D	K	M	Y	R	E	T	K	A	I	F	D	E	L	D	I	D	I	D	.	P	R	A	R	V	G	T	L	S	V	S	Q	M	Q	M	I	E	I	A	K	A	F	S	Y	N	A	K	.	.	I	V	I	M	D	E	P	T	S	S	L	T	E	K	E	V	N	H	L	F	T	I	I	R
Query Conservation																												.																												.	.
Alig confidence																.												.																												.	.
Template Conservation																.
Template Sequence		I	A	L	Q	R	M	A	A	D	L	V	K	R	L	.	D	V	L	L	H	L	G	L	G	Y	L	G	L	D	R	S	T	P	T	L	S	P	G	E	L	Q	R	L	R	L	A	T	Q	L	Y	S	N	L	F	G	V	V	Y	V	L	D	E	P	S	A	G	L	H	P	A	D	T	E	A	L	L	S	A	L	E
Template Known Secondary structure																.						T	T		T	T	S	B	S	S		B	G	G	G	S														T	T	S				S								T	T	T	T			T	T	S
Template Predicted Secondary structure																.
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.							.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.
Query Sequence		K	L	K	E	R	G	C	G	I	V	Y	I	S	H	K	M	E	E	I	F	Q	L	C	D	E	V	T	V	L	.	.	.	.	.	.	R	D	G	Q	W	I	A	T	E	P	L	A	G	L	T	M	D	K	I	I	A	M	M	V	G	R	S	L	N	Q	R	F	P	D	K	E	N	K	P	G	E	V	I	L	E
Query Conservation																															.	.	.	.	.	.
Alig confidence																					.										.	.	.	.	.	.
Template Conservation																					.
Template Sequence		N	L	K	R	G	G	N	S	L	F	V	V	E	H	D	L	D	V	I	.	R	R	A	D	W	L	V	D	V	G	P	E	A	G	E	K	G	G	E	I	L	Y	S	G	P	P	E	G	L	K	H	V	P	E	S	Q	T	G	Q	Y	L	F	A	D	R	H	T	E	P	H	T	P	R	E	P	A	G	W	L	E
Template Known Secondary structure					T	T	T														.				S							S	S	S	G	G	G			S							G	G	G	G	G	S		T	T									T													S
Template Predicted Secondary structure																					.
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.		.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.						.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		V	R	N	L	T	S	L	R	Q	P	S	I	R	D	V	S	F	D	L	H	K	G	E	I	L	G	I	A	G	L	V	G	A	K	R	T	D	I	V	E	.	.	.	.	.	T	L	F	G	I	R	E	K	S	A	G	T	I	T	L	H	G	K	Q	I	N	N	H	N	A	N	E	A	I	N	H	G	F	A	L
Query Conservation																																										.	.	.	.	.
Alig confidence										.	.	.																														.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.																																																									.	.	.	.	.	.	.	.	.	.
Template Sequence		L	N	G	V	T	R	N	N	.	.	.	L	D	N	L	D	V	R	F	P	L	G	V	M	T	S	V	T	G	V	S	G	S	G	K	S	T	L	V	S	Q	A	L	V	D	A	L	A	A	H	F	G	Q	G	S	A	R	L	G	G	D	L	A	Q	I	T	R	.	.	.	.	.	.	.	.	.	.	L	V	R
Template Known Secondary structure								T	T	.	.	.											S	S							S	T	T	S	S						T	T										S									S	S	G	G	G				.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.																																																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		505	.	.	.	.	510	.	.				.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.											.	570	.
		343	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	E	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	Q	K	P	I	G	R	T	P	R	S	N	M	A	T	Y	T	G	L	F	D	Q	V	R	K	L	F	A	A	T	P	L	A	K	K	R	G	Y	N	A	G	R	F	S	F	N	V	K	G	G	R	C	E	H	C	Q	G	E	G	W	V	M	V	P	S	V	Y	A	P	C	P	V	C	H	G	T	R	Y	N
Template Known Secondary structure				S	S		S		S	S	T	T								T	T								T	T	S	S	T					S				T	T	S	S		S	S	S	S	S	S	B		S	S	S	T	T														T	T	T	S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		589	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.
				348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	S	T	G	I	Y	A	Y	L	D	I	G	F	N	S	L	I	S	N	I	R	N	Y	K	N	K	V	G	L	L	D	N	S	R	M	K	S	D	T	Q	W	V	I	D	S	M	R	V	K	T	P	G	H	R	T	Q	I	G	S	L	S	G	G	N	Q	Q	K	V	I	I	G	R	W	L	L	T	Q	P
Query Conservation		.	.
Alig confidence		.	.																		.	.	.	.
Template Conservation																					.	.	.	.
Template Sequence		A	E	T	L	E	V	E	Y	R	G	K	N	I	A	D	V	L	A	L	.	.	.	.	T	V	D	E	A	H	D	F	F	A	D	E	S	A	I	F	R	A	L	D	T	L	R	E	V	G	L	G	Y	L	R	L	G	Q	P	A	T	E	L	S	G	G	E	A	Q	R	I	K	L	A	T	E	L	R	R	S	G
Template Known Secondary structure		T	T	G	G	G			S	S	S								T		.	.	.	.	B								T	T	T															T		T	T	S	B	T	T			G	G	G			S															S	S
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		674	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.					.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.
		426				.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.							480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure			.	.	.																																																						.	.	.	.	.	.
Query SS confidence			.	.	.																																																						.	.	.	.	.	.
Query Sequence		E	.	.	.	I	L	M	L	D	E	P	T	R	G	I	D	V	G	A	K	F	E	I	Y	Q	L	I	A	E	L	A	K	K	G	K	G	I	I	I	I	S	S	E	M	P	E	L	L	G	I	T	D	R	I	L	V	M	.	.	.	.	.	.	S	N	G	L	V	S	G	I	V	D	T	K	T	T
Query Conservation			.	.	.																																																						.	.	.	.	.	.
Alig confidence			.	.	.																																												.										.	.	.	.	.	.
Template Conservation																																																	.
Template Sequence		R	G	G	T	V	Y	V	L	D	E	P	T	T	G	L	H	P	A	D	V	E	R	L	Q	R	Q	L	V	K	L	V	D	A	G	N	T	V	I	A	V	E	H	K	M	Q	V	V	.	A	A	S	D	W	V	L	D	I	G	P	G	A	G	E	D	G	G	R	L	V	A	Q	G	T	P	A	E	V
Template Known Secondary structure		S	S									S		S	S																			T	T														.	T	T		S							S	S	S	G	G	G			S						S
Template Predicted Secondary structure																																																	.
Template SS confidence
		750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.