Job Description P0AAG8 Confidence 100.00% Date Thu Jan 5 11:12:53 GMT 2012 Rank 4 Aligned Residues 457 % Identity 18% Template c2iw3B_ PDB info PDB header:translation Chain: B: PDB Molecule:elongation factor 3a; PDBTitle: elongation factor 3 in complex with adp Resolution 2.4 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	T	T	P	S	S	G	E	Y	L	L	E	M	S	G	I	N	K	S	F	P	G	V	K	A	L	D	N	V	N	L	K	V	R	P	H	S	I	H	A	L	M	G	E	N	G	A	G	K	S	T	L	L	K	C	L	F	G	I	Y	Q	K	D	S	G	T	I	L	F	Q	G	K	E	I	D	F	H	S	A
Query Conservation
Alig confidence																																																																											.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		N	F	D	D	E	E	D	E	G	E	D	L	C	N	C	E	F	S	L	A	Y	G	A	K	I	L	L	N	K	T	Q	L	R	L	K	R	A	R	R	Y	G	I	C	G	P	N	G	C	G	K	S	T	L	X	R	A	I	A	N	G	Q	V	D	G	F	P	T	Q	E	E	C	R	T	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	S	S														T	T													T	T								S	T	T	S	S										T	T		S	T	T				T	T	T	S			.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		K	E	A	L	E	N	G	I	S	M	V	H	Q	E	L	N	L	V	L	Q	R	S	V	M	D	N	M	W	L	G	R	Y	P	T	K	G	M	F	V	D	Q	D	K	M	Y	R	E	T	K	A	I	F	D	E	L	D	I	D	I	D	.	P	R	A	R	V	G	T	L	S	V	S	Q	M	Q	M	I	E	I	A
Query Conservation																																																														.
Alig confidence		.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.																	.
Template Conservation		.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	V	Y	V	E	H	D	I	D	G	T	H	S	D	T	S	V	L	D	F	V	F	E	S	G	V	G	T	.	.	.	.	.	.	.	.	.	.	K	E	A	I	K	D	K	L	I	E	F	G	F	T	D	E	X	I	A	X	P	I	S	A	L	S	G	G	W	K	X	K	L	A	L	A
Template Known Secondary structure		.	.	.	.	.	.	.			T	T								T	T	S	B							T	T			S		.	.	.	.	.	.	.	.	.	.												T								S	B	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
									492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.											.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	F	S	Y	N	A	K	I	V	I	M	D	E	P	T	S	S	L	T	E	K	E	V	N	H	L	F	T	I	I	R	K	L	K	E	R	G	C	G	I	V	Y	I	S	H	K	M	E	E	I	F	Q	L	C	D	E	V	T	V	L	R	D	G	Q	W	I	A	T	E	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.																																		.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.
Template Sequence		R	A	V	L	R	N	A	D	I	L	L	L	D	E	P	T	N	H	L	D	T	V	N	V	A	W	L	V	N	Y	L	N	T	C	.	.	.	G	I	T	S	I	T	I	S	H	D	S	V	F	L	D	N	V	C	E	Y	I	I	N	Y	E	G	L	K	L	R	K	Y	K	G	N	F	T	E	F	V	K	K	C
Template Known Secondary structure						T	T		S						S	T	T	T	T																S	.	.	.		S							S										S							T	T							S
Template Predicted Secondary structure																																				.	.	.
Template SS confidence
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.				.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		P	L	A	G	L	T	M	D	K	I	I	A	M	M	V	G	R	S	L	N	Q	R	F	P	D	K	E	N	K	P	G	E	V	I	L	E	V	R	N	L	T	S	L	R	.	.	.	.	Q	P	S	I	R	D	V	S	F	D	L	H	K	G	E	I	L	G	I	A	G	L	V	G	A	K	R	T	D	I	V	E
Query Conservation																																														.	.	.	.
Alig confidence																																														.	.	.	.
Template Conservation
Template Sequence		P	A	A	K	A	Y	E	E	L	S	N	T	D	L	E	F	K	F	P	E	P	G	Y	L	E	G	V	K	T	K	Q	K	A	I	V	K	V	T	N	X	E	F	Q	Y	P	G	T	S	K	P	Q	I	T	D	I	N	F	Q	C	S	L	S	S	R	I	A	V	I	G	P	N	G	A	G	K	S	T	L	I	N
Template Known Secondary structure		G	G	G	G	G	T	T		S	S	G	G	G	G											T	T			S	T	T	S		S											T	T		S	S		S										T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		632	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	F	G	I	R	E	K	S	A	G	T	I	T	L	H	G	K	Q	I	N	N	H	N	A	N	E	A	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	T	G	E	L	L	P	T	S	G	E	V	Y	T	H	E	N	C	R	I	A	Y	I	K	Q	H	A	F	A	H	I	E	S	H	L	D	K	T	P	S	E	Y	I	Q	W	R	F	Q	T	G	E	D	R	E	T	X	D	R	A	N	R	Q	I	N	E	N	D	A	E	A	X	N	K	I	F	K	I	E	G
Template Known Secondary structure				T	T	S	S			S								T	T														G	G	G		T	T	S										T	T	T	S	S		T	T	T	T	T	T	T	S					S	S		S	S	S	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		712	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.
																																		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.			.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	G	F	A	L	V	T	E	E	R	R	S	T	G	I	Y	A	Y	L	D	I	G	F	N	S	L	I	S	.	.	N	I	R	N	Y	K	N	K	V	G	L	L	D	N	S	R	M	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Conservation
Template Sequence		T	P	R	R	I	A	G	I	H	S	R	R	K	F	K	N	T	Y	E	Y	E	C	S	F	L	L	G	E	N	I	G	X	K	S	E	R	W	V	P	X	X	S	V	D	N	A	W	I	P	R	G	E	L	V	E	S	H	S	K	X	V	A	E	V	D	X	K	E	A	L	A	S	G	Q	F	R	P	L	T	R
Template Known Secondary structure																T	T													S	S	S	S	T	T								G	G	G						G	G	G	T																			T	T
Template Predicted Secondary structure
Template SS confidence
		792	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		S	D	T	Q	W	V	I	D	S	M	R	V	K	T	P	G	H	.	R	T	Q	I	G	S	L	S	G	G	N	Q	Q	K	V	I	I	G	R	W	L	L	T	Q	P	E	I	L	M	L	D	E	P	T	R	G	I	D	V	G	A	K	F	E	I	Y	Q	L	I	A	E	L	A	K	K	G	K	G	I	I	I	I
Query Conservation																			.
Alig confidence																			.																																																					.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		K	E	I	E	E	H	C	S	X	L	G	L	D	P	E	I	V	S	H	S	R	I	R	G	L	S	G	G	Q	K	V	K	L	V	L	A	A	G	T	W	Q	R	P	H	L	I	V	L	D	E	P	T	N	Y	L	D	R	D	S	L	G	A	L	S	K	A	L	K	E	F	.	.	.	E	G	G	V	I	I	I
Template Known Secondary structure											T	T									S		G	G	G	S														T	T	T			S							G	G	G	T																	.	.	.	S	S
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		872	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.				.	.	.	.	.	.	.
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	E	M	P	E	L	L	G	I	T	D	R	I	L	V	M	S	N	G	L	V	S	G	I	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	H	S	A	E	F	T	K	N	L	T	E	E	V	W	A	V	K	D	G	R	X	T	P	S	G	H
Template Known Secondary structure			S						T	T	T								B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		949	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.