Job Description P0AAG8 Confidence 100.00% Date Thu Jan 5 11:12:53 GMT 2012 Rank 1 Aligned Residues 434 % Identity 20% Template c1yqtA_ PDB info PDB header:hydrolyase/translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: rnase-l inhibitor Resolution 1.90 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.									.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.
Query Sequence		S	G	I	N	K	S	F	P	G	V	K	A	L	D	N	V	N	L	K	V	R	P	H	S	I	H	A	L	M	G	E	N	G	A	G	K	S	T	L	L	K	C	L	F	G	I	Y	Q	K	D	.	.	.	.	.	.	.	.	S	G	T	I	L	F	Q	G	K	E	I	D	F	H	S	A	K	E	A	L	E	N
Query Conservation																																																				.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	D	C	V	H	R	Y	G	V	N	A	F	V	L	Y	R	L	P	V	V	K	E	G	X	V	V	G	I	V	G	P	N	G	T	G	K	S	T	A	V	K	I	L	A	G	Q	L	I	P	N	L	C	G	D	N	D	S	W	D	G	V	I	R	A	F	R	G	N	E	L	Q	N	Y	F	E	K	L	K	N	G
Template Known Secondary structure									S	T	T												T	T	S								T	T	S	S										T	S	S				T	T	T	T			S								T	T	T	S	T										T	T
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		G	I	S	M	V	H	Q	E	L	.	.	N	L	V	L	Q	R	S	V	M	D	N	M	W	L	G	R	Y	P	T	K	G	M	F	V	D	Q	D	K	M	Y	R	E	T	K	A	I	F	D	E	L	D	I	D	I	D	P	R	A	R	V	G	T	L	S	V	S	Q	M	Q	M	I	E	I	A	K	A	F	S	Y
Query Conservation											.	.
Alig confidence											.	.																					.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	R	P	V	V	K	P	Q	Y	V	D	L	I	P	K	A	V	K	G	K	V	I	E	L	L	K	K	A	D	E	.	.	.	.	.	.	.	.	.	T	G	K	L	E	E	V	V	K	A	L	E	L	E	N	V	L	E	R	E	I	Q	H	L	S	G	G	E	L	Q	R	V	A	I	A	A	A	L	L	R
Template Known Secondary structure		S								S		G	G	G	S	G	G	G			S	B										S	.	.	.	.	.	.	.	.	.	S	S									T	T		T	T	T	T	T	S	B	G	G	G																	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.										.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	A	K	I	V	I	M	D	E	P	T	S	S	L	T	E	K	E	V	N	H	L	F	T	I	I	R	K	L	K	E	R	G	C	G	I	V	Y	I	S	H	K	M	E	E	I	F	Q	L	C	D	E	V	T	V	L	R	D	G	Q	W	I	A	T	E	P	L	A	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	A	T	F	Y	F	F	D	E	P	S	S	Y	L	D	I	R	Q	R	L	N	A	A	R	A	I	R	R	L	S	E	E	G	K	S	V	L	V	V	E	H	D	L	A	V	L	D	Y	L	S	D	I	I	H	V	V	Y	G	E	P	G	V	Y	G	I	F	S	Q	P	K	G	T	R	N	G	I	N	E	F	L
Template Known Secondary structure				S						S	T	T	T	T																			T	T								S										S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
			235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure		.																																												.
Query SS confidence		.																																												.
Query Sequence		.	G	L	T	M	D	K	I	I	A	M	M	V	G	R	S	L	N	Q	R	F	P	D	K	E	N	K	P	G	E	V	I	L	E	V	R	N	L	T	S	L	R	Q	P	.	S	I	R	D	V	S	F	D	L	H	K	G	E	I	L	G	I	A	G	L	V	G	A	K	R	T	D	I	V	E	T	L	F	G	I
Query Conservation		.																																												.
Alig confidence		.																																												.
Template Conservation
Template Sequence		R	G	Y	L	K	D	E	N	V	R	F	R	P	Y	E	I	K	F	T	K	T	G	E	R	V	E	I	E	R	E	T	L	V	T	Y	P	R	L	V	K	D	Y	G	S	F	R	L	E	V	E	P	G	E	I	K	K	G	E	V	I	G	I	V	G	P	N	G	I	G	K	T	T	F	V	K	X	L	A	G	V
Template Known Secondary structure			T			T	T	T	T				S	S	S							S	S	G	G	G	S	S																T	T												T	T									T	T	S	S										T	S
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	K	S	A	G	T	I	T	L	H	G	K	Q	I	N	N	H	N	A	N	E	A	I	N	H	G	F	A	L	V	T	E	E	R	R	S	T	G	I	Y	A	Y	L	D	I	G	F	N	S	L	I	S	N	I	R	N	Y	K	N	K	V	G	L	L	D	N	S	R	M	K	S	D	T	Q	W	V	I	D	S
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	P	T	E	G	K	I	E	W	D	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	Y	K	P	Q	Y	.	.	.	I	K	A	D	Y	E	G	T	V	Y	E	L	L	S	K	I	D	A	S	K	L	N	.	.	.	.	.	.	.	.	.	.	S	N	F	Y	K	T	E	L	L	K	P
Template Known Secondary structure		S			S	B									.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S	.	.	.						S	S	B														T	.	.	.	.	.	.	.	.	.	.								T	T	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400															.	.	.	.	.	.	.				.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.											430	.	.	.	.	.	.	.	.	.	440
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.		.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		M	R	V	K	T	P	G	H	R	T	Q	I	G	S	L	S	G	G	N	Q	Q	K	V	I	I	G	R	W	L	L	T	Q	P	E	I	L	M	L	D	E	P	T	R	G	I	D	V	G	A	K	F	E	I	Y	Q	L	I	A	E	L	A	K	K	.	G	K	G	I	I	I	I	S	S	E	M	P	E	L	L	G
Query Conservation																																																																	.
Alig confidence					.																																																												.
Template Conservation					.
Template Sequence		L	G	I	.	I	D	L	Y	D	R	E	V	N	E	L	S	G	G	E	L	Q	R	V	A	I	A	A	T	L	L	R	D	A	D	I	Y	L	L	D	E	P	S	A	Y	L	D	V	E	Q	R	L	A	V	S	R	A	I	R	H	L	X	E	K	N	E	K	T	A	L	V	V	E	H	D	V	L	X	I	D	Y
Template Known Secondary structure		T	T		.	G	G	G	T	T	S	B	G	G	G																T	S			S							T	T	T	T																					T								S
Template Predicted Secondary structure					.
Template SS confidence
		441	.	.		.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	D	R	I	L	V	M	S	N	G	L	V	S	G	I	V
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		V	S	D	R	L	X	V	F	.	E	G	E	P	G	K	Y	G
Template Known Secondary structure				S						.				T	T	T
Template Predicted Secondary structure										.
Template SS confidence
		520	.	.	.	.	.	.	.		.	.	530	.	.	.	.	.