Job Description P0AAG8 Confidence 99.97% Date Thu Jan 5 11:12:53 GMT 2012 Rank 60 Aligned Residues 369 % Identity 15% Template c1u9iA_ PDB info PDB header:circadian clock protein Chain: A: PDB Molecule:kaic; PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites Resolution 2.80 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		V	R	P	H	S	I	H	A	L	M	G	E	N	G	A	G	K	S	T	L	L	K	.	.	C	L	F	G	I	Y	Q	K	D	S	G	T	I	L	F	Q	G	K	E	I	D	F	H	S	A	K	E	A	L	E	N	G	I	S	M	V	H	Q	E	L	N	L	V	L	Q	R	S	V	M	D	N	M	W	L	G	R
Query Conservation																								.	.
Alig confidence																								.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.
Template Sequence		L	P	I	G	R	S	T	L	V	S	G	T	S	G	T	G	K	T	L	F	S	I	Q	F	L	Y	N	G	I	I	E	F	D	E	P	G	V	F	V	T	F	E	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	D	I	I	.	.	.
Template Known Secondary structure				T	T	S							S	T	T	S	S																									S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.																													80	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		Y	P	T	K	G	M	F	V	D	Q	D	K	M	Y	R	E	T	K	A	I	F	D	E	L	D	I	D	I	D	P	R	A	R	V	G	T	L	S	V	S	Q	M	Q	M	I	E	I	A	K	A	F	S	Y	N	A	K	I	V	I	M	D	E	P	T	S	S	L	.	.	.	.	T	E	K	E	V	N	H	L	F
Query Conservation																																																																					.	.	.	.
Alig confidence																																																																					.	.	.	.
Template Conservation
Template Sequence		K	N	A	R	S	F	G	W	D	L	A	K	L	V	D	E	G	K	L	F	I	L	D	A	S	P	D	P	E	G	Q	E	V	V	G	G	F	D	L	S	A	L	I	E	R	I	N	Y	A	I	Q	K	Y	R	A	R	R	V	S	I	D	S	V	T	S	V	F	Q	Q	Y	D	A	S	S	V	V	R	R	E	L
Template Known Secondary structure					G	G	G	T									T	T	S										S	S			S			S	S																		T		S							S	T	T	T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure								.																											.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.																											.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	I	I	R	K	L	.	K	E	R	G	C	G	I	V	Y	I	S	H	K	M	E	E	I	F	Q	L	C	D	E	V	T	V	.	.	L	R	D	G	Q	W	I	A	T	E	P	L	A	G	L	T	M	D	K	I	I	A	M	M	V	G	R	S	L	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.																											.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.																											.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	R	L	V	A	R	L	K	Q	I	G	A	T	T	V	M	T	T	E	R	I	E	E	Y	G	P	I	A	R	Y	G	V	E	E	F	V	S	D	N	V	V	I	L	R	N	V	L	E	G	E	R	R	R	R	T	L	E	I	L	K	L	R	G	T	S	H	M	K	G	E	Y	P	F	T	I	T	D	H	G	I
Template Known Secondary structure												T										S	S	S	S	S		S	S	T	T	S							S										S	T	T												T	T	S					S								T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	P	D	K	E	N	K	P	G	E	V	I	L	E	V	R	N	L	T	S	L	R	Q	P	S	I	R	D	V	S	F	D	L	H	K	G	E	I	L	G	I	A	G	L	V	G	A	K	R	T	D	I	V	E	T	L	F	G	I	R	E	K	S	A	G	T	I	T	L	H	G	K	Q	I	N	N	H	N	A
Query Conservation
Alig confidence																																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	F	P	L	G	A	M	R	L	T	Q	R	S	S	N	V	R	V	S	S	G	V	V	R	L	D	E	M	C	G	G	G	F	F	K	D	S	I	I	L	A	T	G	A	T	G	T	G	K	T	L	L	V	S	R	F	V	E	N	A	C	A	N	K	E	R	A	I	L	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	T			S												S								T	T	S	S			S	S									T	T	S	S														T	T	T						.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	A	I	N	H	G	F	A	L	V	T	E	E	R	R	S	T	G	I	Y	A	Y	L	D	I	G	F	N	S	L	I	S	N	I	R	N	Y	K	N	K	V	G	L	L	D	N	S	R	M	K	S	D	T	Q	W	V	I	D	S	M	R	V	K	T	P	G	H	R	T	Q	I	G	S	L	S	G	G	N	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.											.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.											.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	Y	E	E	S	R	A	Q	L	L	R	N	A	Y	S	W	G	M	D	.	.	.	.	.	.	.	.	F	E	E	M	E	R	Q	N	L	L	.	.	K	I	V	C	A	Y	P	E	S	A	G	L	E	D	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S											T	T	S			.	.	.	.	.	.	.	.							T	T	S		.	.							G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.											.	.
Template SS confidence
																											315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.									.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.					.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.									.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure																								.	.	.	.																															.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.																															.	.	.	.	.	.	.	.
Query Sequence		Q	K	V	I	I	G	R	W	L	L	T	Q	P	E	I	L	M	L	D	E	P	T	.	.	.	.	R	G	I	D	V	G	A	K	F	E	I	Y	Q	L	I	A	E	L	A	K	K	G	K	G	I	I	I	I	S	S	.	.	.	.	.	.	.	.	E	M	P	E	L	L	G	I	T	D	R	I	L	V	M	S
Query Conservation																								.	.	.	.																															.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Q	I	I	K	S	E	I	N	D	F	K	P	A	R	I	A	I	D	S	L	S	A	L	A	R	G	V	S	N	N	A	F	R	Q	F	V	I	G	V	T	G	Y	A	K	Q	E	E	I	T	G	L	F	T	N	T	S	D	Q	F	M	G	A	H	S	I	T	D	S	H	I	I	T	D	T	I	I	L	L	Q
Template Known Secondary structure											T	T			S											T	S	S	S																			T	T										S	S	S	S				S	S		S	S					S
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.