Job Description P32714 Confidence 100.00% Date Thu Jan 5 11:50:35 GMT 2012 Rank 3 Aligned Residues 411 % Identity 28% Template c1yc9A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein; PDBTitle: the crystal structure of the outer membrane protein vcec from the2 bacterial pathogen vibrio cholerae at 1.8 resolution Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	Q	A	Q	W	W	K	Q	L	N	D	P	Q	L	D	A	L	I	Q	R	T	L	S	G	S	H	T	L	A	E	A	K	L	R	E	E	K	A	Q	S	Q	A	D	L	L	D	A	G	S	Q	L	Q	V	A	A	L	G	M	L	N	R	Q	R	V	S	A	N	G	F	L	S	P	Y	S	M	D	A	P	A
Query Conservation
Alig confidence																																																																														.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		W	P	S	A	N	W	W	Q	R	Y	Q	D	A	Q	L	N	H	L	I	E	E	A	L	Q	H	S	P	S	L	C	M	A	M	A	R	L	K	G	A	Q	G	F	A	R	Q	A	G	A	I	R	S	F	D	L	G	L	A	A	S	A	T	E	S	K	V	S	E	R	Y	Q	S	A	T	P	P	D	.	.	.	.
Template Known Secondary structure					T	T	G	G	G	G	G															S																							G	G	G	S																S	S	S	S		S	S				.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	M	D	G	P	Y	Y	T	E	A	T	V	G	L	F	A	G	L	D	L	D	L	W	G	V	H	R	S	A	V	A	A	A	I	G	A	H	N	A	A	L	A	E	T	A	A	V	E	L	S	L	A	T	G	V	A	Q	L	Y	Y	S	M	Q	A	S	Y	Q	M	L	D	L	L	E	Q	T	H	D	V	I
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	G	W	N	D	Y	G	T	L	T	L	N	F	Q	Y	D	F	D	F	W	G	K	N	R	A	A	V	V	A	A	T	S	E	L	A	A	A	E	A	E	S	V	A	A	R	L	M	I	S	T	S	I	A	N	A	Y	A	E	L	A	R	L	Y	A	N	Q	E	T	V	H	A	A	L	Q	V	R
Template Known Secondary structure		.	.	.	.	.	S																	T	T	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	A	V	K	A	H	Q	S	K	V	A	H	G	L	E	A	Q	V	P	F	H	G	A	R	A	Q	I	L	A	V	D	K	Q	I	V	A	V	K	G	Q	I	T	E	T	R	E	S	L	R	A	L	I	G	A	G	A	S	D	M	P	E	I	R	P	V	A	L	P	Q	V	Q	T	G	I	P	A	T	L	S
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		N	K	T	V	E	L	L	E	K	R	Y	A	N	G	L	E	T	L	G	S	V	S	Q	A	K	A	V	A	A	S	V	E	A	E	L	L	G	I	Q	E	S	I	Q	L	Q	K	N	A	L	A	A	L	V	G	Q	G	P	D	R	A	A	S	I	E	E	P	H	I	T	L	T	S	R	Y	V	.	.	.	.	.
Template Known Secondary structure														T	T	S	S																																					T	T			G	G	G	G	G	G														.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	L	L	A	R	R	P	D	L	Q	A	M	R	W	Y	V	Q	A	S	L	D	Q	V	D	S	A	R	A	L	F	Y	P	S	F	D	I	K	A	F	F	G	L	D	S	I	H	L	H	T	L	F	K	K	T	S	R	Q	F	N	F	I	P	G	L	K	L	P	L	F	D	G	G	R	L	N	A	N	L	E
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	G	L	L	G	H	R	A	D	I	T	A	A	R	W	R	A	E	A	A	A	Q	Q	V	G	I	A	Q	A	Q	F	Y	P	D	V	T	L	S	A	F	I	G	Y	Q	A	F	G	L	D	H	L	F	D	S	G	N	D	A	G	A	I	G	P	A	I	Y	L	P	L	F	T	G	G	R	L	E	G	Q	L	T
Template Known Secondary structure		.	G	G	G	T	T																								T	T	S															S	G	G	G	T	T	S	T	T																	T	T
Template Predicted Secondary structure		.
Template SS confidence
			296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	R	A	A	S	N	M	M	I	E	R	Y	N	Q	S	V	L	N	A	V	R	D	V	A	V	N	G	T	R	L	Q	T	L	N	D	E	R	E	M	Q	A	E	R	V	E	A	T	R	F	T	Q	R	A	A	E	A	A	Y	Q	R	G	L	T	S	R	L	Q	A	T	E	A	R	L	P	V	L	A	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	E	A	R	Y	Q	E	A	V	A	Q	Y	N	G	T	L	V	Q	A	L	H	E	I	A	D	V	V	T	S	S	Q	A	L	Q	A	R	I	N	K	T	E	Q	A	V	Q	Q	A	E	Q	A	L	H	I	A	T	N	R	Y	Q	G	G	L	A	T	Y	L	D	V	L	V	A	E	E	S	L	L	N	N	Q
Template Known Secondary structure																																																													T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	L	L	M	L	D	S	R	R	V	I	Q	S	I	Q	L	M	K	S	L	G	G	G	Y	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	L	V	N	L	Q	S	R	A	F	S	L	D	L	A	L	I	H	A	L	G	G	G	F	E
Template Known Secondary structure																							T
Template Predicted Secondary structure
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480