Job Description P32714 Confidence 100.00% Date Thu Jan 5 11:50:35 GMT 2012 Rank 4 Aligned Residues 394 % Identity 14% Template c1tqqC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:outer membrane protein tolc; PDBTitle: structure of tolc in complex with hexamminecobalt Resolution 2.75 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	D	A	L	I	Q	R	T	L	S	G	S	H	T	L	A	E	A	K	L	R	E	E	K	A	Q	S	Q	A	D	L	L	D	A	G	S	Q	L	Q	V	A	A	L	G	M	L	N	R	Q	R	V	S	A	N	G	F	L	S	P	Y	S	M	D	A	P	A	L	G	M	D	G	P	Y	Y	T	E	A	T	V
Query Conservation
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	M	Q	V	Y	Q	Q	A	R	L	S	N	P	E	L	R	K	S	A	A	D	R	D	A	A	F	E	K	I	N	E	A	R	S	P	L	L	P	Q	L	G	L	G	A	D	Y	T	Y	S	N	G	Y	R	D	A	N	G	I	N	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	S	A
Template Known Secondary structure																																				G	G	G	S																S	S	S	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.															.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	F	A	G	L	D	L	D	L	W	G	V	H	R	S	A	V	A	A	A	I	G	A	H	N	A	A	L	A	E	T	A	A	V	E	L	S	L	A	T	G	V	A	Q	L	Y	Y	S	M	Q	A	S	Y	Q	M	L	D	L	L	E	Q	T	H	D	V	I	D	Y	A	V	K	A	H	Q	S	K	V	A	H
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		S	L	Q	L	T	Q	S	I	F	D	M	S	K	W	.	R	A	L	T	L	Q	E	K	A	A	G	I	Q	D	V	T	Y	Q	T	D	Q	Q	T	L	I	L	N	T	A	T	A	Y	F	N	V	L	N	A	I	D	V	L	S	Y	T	Q	A	Q	K	E	A	I	Y	R	Q	L	D	Q	T	T	Q	R	F	N	V
Template Known Secondary structure																.																																																																	T
Template Predicted Secondary structure																.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	E	A	Q	V	P	F	H	G	A	R	A	Q	I	L	A	V	D	K	Q	I	V	A	V	K	G	Q	I	T	E	T	R	E	S	L	R	A	L	I	G	A	G	A	S	D	M	P	E	I	R	P	V	A	L	P	Q	V	Q	T	G	I	P	A	T	L	S	Y	E	L	L	A	R	R	P	D	L	Q	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	V	A	I	T	D	V	Q	N	A	R	A	Q	Y	D	T	V	L	A	N	E	L	T	A	R	N	N	L	D	N	A	V	E	Q	L	R	Q	I	T	G	N	Y	Y	P	E	L	A	A	L	N	V	E	N	F	K	T	D	K	P	Q	P	V	N	A	L	L	K	E	A	E	K	R	N	L	S	L	L	Q	A
Template Known Secondary structure		T	S	S																																						S				S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.											.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.
Query Sequence		R	W	Y	V	Q	A	S	L	D	Q	V	D	S	A	R	A	L	F	Y	P	S	F	D	I	K	A	F	F	G	L	D	S	I	H	L	H	.	.	.	.	.	.	.	.	.	.	T	L	F	K	K	T	S	R	Q	F	N	F	I	P	G	L	K	L	P	L	F	D	G	G	R	L	N	A	N	L	E	G	T	R
Query Conservation																																						.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	S	Q	D	L	A	R	E	Q	I	R	Q	A	Q	D	G	H	L	P	T	L	D	L	T	A	S	T	G	I	S	D	T	S	Y	S	G	S	K	T	R	G	A	A	G	T	Q	Y	D	D	S	N	M	G	Q	N	K	V	G	L	S	F	S	L	P	I	Y	Q	G	G	M	V	N	S	Q	V	K	Q	A	Q
Template Known Secondary structure																	G	G	G	S																		S	G	G	G	S	S	S			S	T	T	S	B																S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	S	N	M	M	I	E	R	Y	N	Q	S	V	L	N	A	V	R	D	V	A	V	N	G	T	R	L	Q	T	L	N	D	E	R	E	M	Q	A	E	R	V	E	A	T	R	F	T	Q	R	A	A	E	A	A	Y	Q	R	G	L	T	S	R	L	Q	A	T	E	A	R	L	P	V	L	A	E	E	M	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	N	F	V	G	A	S	E	Q	L	E	S	A	H	R	S	V	V	Q	T	V	R	S	S	F	N	N	I	N	A	S	I	S	S	I	N	A	Y	K	Q	A	V	V	S	A	Q	S	S	L	D	A	M	E	A	G	Y	S	V	G	T	R	T	I	V	D	V	L	D	A	T	T	T	L	Y	N	A	K	Q	E	L
Template Known Secondary structure																																																											T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	L	D	S	R	R	V	I	Q	S	I	Q	L	M	K	S	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	A	R	Y	N	Y	L	I	N	Q	L	N	I	K	S	A	L	G
Template Known Secondary structure																				T
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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