Job Description P45955 Confidence 47.58% Date Thu Jan 5 12:03:52 GMT 2012 Rank 138 Aligned Residues 112 % Identity 9% Template c3i4gA_ PDB info PDB header:carbohydrate-binding protein Chain: A: PDB Molecule:susd-like carbohydrate binding protein bf1063; PDBTitle: crystal structure of a susd-like carbohydrate binding protein (bf0978)2 from bacteroides fragilis nctc 9343 at 1.35 a resolution Resolution 1.35 Å

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		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	N	A	N	T	D	Y	N	A	A	I	A	L	V	Q	D	K	S	R	Q	D	D	A	M	V	A	F	Q	N	F	I	K	N	Y	P	D	S	T	Y	L	P	N	A	N	Y	W	L	G	Q	L	N	Y	N	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	D	N	A	F	I	K	R	Y	W	E	T	S	Y	K	R	I	G	Y	C	N	R	F	L	V	G	I	Q	N	S	S	E	S	E	K	K	T	R	X	I	A	E	A	R	F	L	R	A	T	Q	Y	F	Y	L	A	S	Y	F	K	N	V	P	L	V	E	N	V	L	T	G	E	E	A	N	N	V	T	K	T
Template Known Secondary structure			T	T																										T	T	S																												T		S	B					S								T	T				B
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
						195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.											.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure		.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	K	K	D	D	A	A	Y	Y	F	A	S	V	V	K	N	Y	P	K	.	.	.	.	.	.	.	.	.	.	S	P	K	A	A	D	A	M	F	K	V	G	V	I	M	Q	D	K	G	D	T	A	K	A	K	A	V	Y	Q	Q	V	I	S	K	Y	P	G	T
Query Conservation		.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	Q	A	D	I	L	K	W	C	V	T	E	F	T	A	A	A	A	D	L	P	R	F	S	A	I	P	A	G	E	A	G	R	A	C	K	Q	A	A	L	A	F	L	G	R	T	C	X	L	Q	K	D	W	K	S	G	A	K	A	F	H	D	I	X	E	L	G	D	N	A
Template Known Secondary structure																					S			G	G	G			G	G	G	T	T	S																		T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions