Job Description P45955 Confidence 99.41% Date Thu Jan 5 12:03:52 GMT 2012 Rank 59 Aligned Residues 143 % Identity 9% Template c2r5sB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp0806; PDBTitle: the crystal structure of a domain of protein vp0806 (unknown function)2 from vibrio parahaemolyticus rimd 2210633 Resolution 2.14 Å

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		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	D	Q	S	G	A	A	A	S	T	T	P	T	A	D	A	G	T	A	N	A	G	A	P	V	K	S	G	N	A	N	T	D	Y	N	A	A	I	A	L	V	Q	D	K	S	R	Q	D	D	A	M	V	A	F	Q	N	F	I	K	N	Y	P	D	S	T	Y	L	P	N	A	N	Y	W	L	G	Q	L	N	Y
Query Conservation
Alig confidence																																																																				.	.	.
Template Conservation																																																																				.	.	.
Template Sequence		L	L	K	Q	V	S	E	L	L	Q	Q	G	E	H	A	Q	A	L	N	V	I	Q	T	L	S	D	E	L	Q	S	R	G	D	V	K	L	A	K	A	D	C	L	L	E	T	K	Q	F	E	L	A	Q	E	L	L	A	T	I	P	L	E	Y	Q	D	N	S	.	.	.	Y	K	S	L	I	A	K	L	E	L	H
Template Known Secondary structure												T	T												S						T	S														T	T										T	T			G	G	G					.	.	.
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		N	K	G	K	K	D	D	A	A	Y	Y	F	A	S	V	V	K	N	Y	P	K	S	P	K	A	A	D	A	M	F	K	V	G	V	I	M	Q	D	K	G	D	T	A	K	A	K	A	V	Y	Q	Q	V	I	S	K	Y	P	G	.	.	T	D	G	A	K	Q	A	Q	K	R	L
Query Conservation																																																												.	.
Alig confidence																								.	.	.																																		.	.
Template Conservation																								.	.	.
Template Sequence		Q	Q	A	A	E	S	P	E	L	K	R	L	E	Q	E	L	A	A	N	P	D	N	.	.	.	F	E	L	A	C	E	L	A	V	Q	Y	N	Q	V	G	R	D	E	E	A	L	E	L	L	W	N	I	L	K	V	N	L	G	A	Q	D	G	E	V	K	K	T	F	X	D	I
Template Known Secondary structure					T	S															T	T		.	.	.														T	T														T	T		T	T	T	T	T	T
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions