Job Description P45955 Confidence 99.13% Date Thu Jan 5 12:03:52 GMT 2012 Rank 81 Aligned Residues 217 % Identity 11% Template c2ifuA_ PDB info PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:gamma-snap; PDBTitle: crystal structure of a gamma-snap from danio rerio Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.											.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	G	S	V	E	D	R	V	T	Q	L	E	R	I	S	N	A	.	.	.	.	.	.	.	.	.	.	H	S	Q	L	L	T	Q	L	Q	Q	Q	L	S	D	N	Q	S	D	I	D	S	L	R	G	Q	I	Q	E	N	Q	Y	Q	L	N	Q	V	V	E	R	Q	K	Q	I	L	L	Q	I	D	S	L	S	S
Query Conservation																				.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	Q	K	I	S	E	A	H	E	H	I	A	K	A	E	K	Y	L	K	T	S	F	X	K	W	K	P	D	Y	D	S	A	A	S	E	Y	A	K	A	A	V	A	F	K	N	A	K	Q	L	E	Q	A	K	D	A	Y	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	E	A	E	A	H	A	N	N	R
Template Known Secondary structure																								S	S	S		S																				T	T												.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.													60	.	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		G	G	A	A	A	Q	S	T	S	G	D	Q	S	G	A	A	A	S	T	T	P	T	A	D	A	G	T	A	N	A	G	A	.	.	.	.	.	P	V	K	S	G	N	A	N	T	D	Y	N	A	A	I	A	L	V	Q	D	K	S	R	Q	D	D	A	M	V	A	F	Q	N	F	I	K	N	Y	P	D	S	T	Y
Query Conservation																																		.	.	.	.	.
Alig confidence																																		.	.	.	.	.
Template Conservation
Template Sequence		S	L	F	H	A	A	K	A	F	E	Q	A	G	X	X	L	K	D	L	Q	R	X	P	E	A	V	Q	Y	I	E	K	A	S	V	X	Y	V	E	N	G	T	P	D	T	A	A	X	A	L	D	R	A	G	K	L	X	E	P	L	D	L	S	K	A	V	H	L	Y	Q	Q	A	A	A	V	F	E	N	E	E	R
Template Known Secondary structure																				T	T		G	G	G	G													T	T	T																	T	T	T																			T	T
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
					179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.				.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250
Predicted Secondary structure		.	.	.																																		.	.	.																																						.	.
Query SS confidence		.	.	.																																		.	.	.																																						.	.
Query Sequence		.	.	.	L	P	N	A	N	Y	W	L	G	Q	L	N	Y	N	K	G	K	K	D	D	A	A	Y	Y	F	A	S	V	V	K	N	Y	P	.	.	.	K	S	P	K	A	A	D	A	M	F	K	V	G	V	I	M	Q	D	K	G	D	T	A	K	A	K	A	V	Y	Q	Q	V	I	S	K	Y	P	.	.	G	T
Query Conservation		.	.	.																																		.	.	.																																						.	.
Alig confidence		.	.	.																																		.	.	.																																						.	.
Template Conservation
Template Sequence		L	R	Q	A	A	E	L	I	G	K	A	S	R	L	L	V	R	Q	Q	K	F	D	E	A	A	A	S	L	Q	K	E	K	S	X	Y	K	E	X	E	N	Y	P	T	C	Y	K	K	C	I	A	Q	V	L	V	Q	L	H	R	A	D	Y	V	A	A	Q	K	C	V	R	E	S	Y	S	I	P	G	F	S	G	S
Template Known Secondary structure																			T	T																			T	T																			T	T													T	T	S	T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	A	K	Q	A	Q	K	R	L	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	C	A	A	L	E	D	L	L	Q	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions