Job Description P04693 Confidence 99.85% Date Thu Jan 5 10:58:18 GMT 2012 Rank 204 Aligned Residues 326 % Identity 15% Template d2v1pa1 SCOP info PLP-dependent transferase-like PLP-dependent transferases Beta-eliminating lyases Resolution 1.9

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L
Query Conservation
Alig confidence																					.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	.	.	.	.	R	G	D	E	A	F	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	.	.	.	.	.	.	.	.	.	.	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L
Template Known Secondary structure			S			T	T		S										T	T	.	.	.	.	.	.	S					S	S	S															T			.	.	.	.	.	.	.	.	.	.	S							S	S	T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.							.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.											.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.										130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.									.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.																		.
Query SS confidence																.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.																		.
Query Sequence		K	R	Y	F	P	E	S	G	V	W	V	S	D	P	.	.	.	.	.	.	.	.	.	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	.	.	.	.	.	.	.	.	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	.	R	S	I	V	L
Query Conservation																.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.																		.
Alig confidence		.	.													.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.																		.
Template Conservation		.	.
Template Sequence		.	.	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I
Template Known Secondary structure		.	.												T	T	T						S	S												T	T							B		T	T	T	T		T	T	S			T	T	T	T		B														G	G	G
Template Predicted Secondary structure		.	.
Template SS confidence
				114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		178	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.											.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure											.																													.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																													.	.	.	.	.	.	.	.	.	.
Query Sequence		L	H	P	C	C	H	N	P	T	.	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	.	.	.	.	.	.	.	.	.	.	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S
Query Conservation											.																													.	.	.	.	.	.	.	.	.	.
Alig confidence											.																													.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation																																																																									.	.
Template Sequence		V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	.	.	M	L	A	M	S	A	K
Template Known Secondary structure					S	S	B		G	G	G		B																	T	T								T	T													G	G	G	T	T	S										G	G	G		S	.	.						S	S
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L
Query Conservation
Alig confidence						.																																																		.	.	.	.	.	.	.	.
Template Conservation						.																																																		.	.	.	.	.	.	.	.
Template Sequence		K	D	A	M	.	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	.	.	.	.	.	.	.	.	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L
Template Known Secondary structure		S	T	T		.		S	S								S	G	G	G													T	T	S	S																				.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure						.																																																		.	.	.	.	.	.	.	.
Template SS confidence
		270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.									.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.														.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.
Template Sequence		V	D	G	L	E	E	I	G	.	.	.	.	.	.	V	V	Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E
Template Known Secondary structure								T	T	.	.	.	.	.	.							S	S										S	T	T	S		G	G	G																						S						B		T	T	T		S	B				S
Template Predicted Secondary structure										.	.	.	.	.	.
Template SS confidence
		342	.	.	.	.	.	.	.							350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
				375	.	.	.			.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure		.	.					.	.
Query SS confidence		.	.					.	.
Query Sequence		.	.	R	M	C	V	.	.	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V
Query Conservation		.	.					.	.
Alig confidence		.	.					.	.
Template Conservation
Template Sequence		L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V
Template Known Secondary structure									T	T	T
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions