Job Description P04693 Confidence 99.90% Date Thu Jan 5 10:58:18 GMT 2012 Rank 174 Aligned Residues 315 % Identity 10% Template d2fnua1 SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.50

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	.	K	R	Y	F
Query Conservation																																																																													.
Alig confidence																						.	.	.	.																								.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																						.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Template Sequence		S	E	P	C	L	D	K	E	D	K	K	A	V	L	E	V	L	N	S	K	.	.	.	.	Q	L	T	Q	G	K	R	S	L	L	F	E	E	A	L	C	E	F	L	G	V	K	H	.	.	.	.	.	.	.	.	.	.	A	L	V	F	N	S	A	T	S	A	L	L	T	L	Y	R	N	F	S	E	F	S	A
Template Known Secondary structure																			T	S	S	.	.	.	.			S	S	S															T		S		.	.	.	.	.	.	.	.	.	.					S													S	S				T
Template Predicted Secondary structure																						.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.											50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I
Query Conservation
Alig confidence																																				.	.											.	.	.	.												.	.										.	.	.
Template Conservation																																				.	.											.	.	.	.												.	.										.	.	.
Template Sequence		D	R	N	E	I	I	T	T	P	I	S	F	V	A	T	A	N	M	L	L	E	S	G	Y	T	P	V	F	A	G	I	K	N	D	.	.	G	N	I	D	E	L	A	L	E	K	.	.	.	.	L	I	N	E	R	T	K	A	I	V	S	.	.	V	D	Y	A	G	K	S	V	E	.	.	.	V	E	S	V	Q
Template Known Secondary structure		T	S							S	S	S		T									T	T								B		T	T	.	.	S	S	B		G	G	G	S	G	G	.	.	.	.	G			T	T							.	.			G	G	G					.	.	.
Template Predicted Secondary structure																																				.	.											.	.	.	.												.	.										.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.				.	.	.	140	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	.
Query Conservation																																																																																	.
Alig confidence																														.	.	.	.	.	.																		.																												.
Template Conservation																														.	.	.	.	.	.																		.
Template Sequence		K	L	C	K	K	H	S	L	S	F	L	S	D	S	S	H	A	L	G	S	E	Y	Q	N	K	K	V	G	.	.	.	.	.	.	G	F	A	L	A	S	V	F	S	F	H	A	I	K	P	I	T	.	T	A	E	G	G	A	V	V	T	N	D	S	E	L	H	E	K	M	K	L	F	R	S	H	G	M	L	K
Template Known Secondary structure								T								T	T		T	T				T	T			T	T	.	.	.	.	.	.	S	S	S	S								T	T	S	S	S		.		S	S							S												T	B	T	T
Template Predicted Secondary structure																														.	.	.	.	.	.																		.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.							170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
										279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																						.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																																						.	.	.
Query Sequence		.	.	.	.	.	.	.	.	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	.	.	.
Query Conservation		.	.	.	.	.	.	.	.																																																																						.	.	.
Alig confidence		.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.																																					.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	F	F	E	G	E	V	K	S	I	G	H	N	F	R	L	N	E	I	Q	S	A	L	G	L	S	Q	L	K	K	.	.	.	.	.	.	.	.	.	.	A	P	F	L	M	Q	K	R	E	E	A	A	L	T	Y	D	R	I	F	K	D	N	P	Y	F	T	P	L	H	P	L	L	K	D	K	S	S	N	H
Template Known Secondary structure		S	S	S	S					S	S				B																T	T	.	.	.	.	.	.	.	.	.	.																				T	T		S	S				S	G	G	G		S	S					S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.											.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
			348	.	350	.	.	.					.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.																														.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure		.							.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query SS confidence		.							.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query Sequence		.	M	F	S	Y	T	G	.	.	.	.	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	.	A	G	L	N	T	A	N	V	Q	R	V	A	K	A
Query Conservation		.							.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Alig confidence		.							.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation
Template Sequence		L	Y	P	I	L	M	H	Q	K	F	F	T	C	K	K	L	I	L	E	S	L	H	K	R	G	I	L	A	Q	V	H	Y	K	P	I	Y	Q	Y	Q	L	Y	Q	Q	L	F	N	T	A	P	L	K	S	A	E	D	F	Y	H	A	E	I	S	L	P	C	H	A	N	L	N	L	E	S	V	Q	N	I	A	H	S
Template Known Secondary structure									G	G	G	G	G	G											T	T				B						G	G	G	S																													T	T
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		393	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	K	T	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions