Job Description P04693 Confidence 99.90% Date Thu Jan 5 10:58:18 GMT 2012 Rank 168 Aligned Residues 347 % Identity 14% Template d1rv3a_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.40

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.
Query SS confidence																																																.	.	.	.	.
Query Sequence		I	L	T	L	M	E	R	F	K	E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	.	.	.	.	.	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D
Query Conservation																																																.	.	.	.	.
Alig confidence															.									.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation															.									.	.	.	.	.	.	.
Template Sequence		V	Y	D	I	I	K	K	E	S	N	R	Q	R	.	V	G	L	E	L	I	A	S	.	.	.	.	.	.	.	E	N	F	A	S	R	A	V	L	E	A	L	G	S	C	L	N	N	K	Y	S	L	G	Y	P	G	Q	R	Y	Y	G	G	T	E	H	I	D	E	L	E	T	L	C	Q	K	R	A	L	Q	A	Y
Template Known Secondary structure															.	S	S					T	T	.	.	.	.	.	.	.													T	S	G	G	G	T							T	T			S	S	S																				T
Template Predicted Secondary structure															.									.	.	.	.	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.								.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.									.	.	.	.	150	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.									.
Query SS confidence																																																												.	.	.	.	.	.	.	.									.
Query Sequence		H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	.	.	.	.	.	.	.	.	S	T	Y	P	W	Y	D	E	.	A	T	N	G	V
Query Conservation																																																												.	.	.	.	.	.	.	.									.
Alig confidence					.																									.	.																													.	.	.	.	.	.	.	.									.
Template Conservation					.																									.	.
Template Sequence		G	L	D	.	P	Q	C	W	G	V	N	V	Q	P	Y	S	G	S	P	A	N	F	A	V	Y	T	A	L	.	.	V	E	P	H	G	R	I	M	G	L	D	L	P	D	G	G	H	L	T	H	G	F	M	T	D	K	K	K	I	S	A	T	S	I	F	F	E	S	M	A	Y	K	V	N	P	D	T	G	Y	I
Template Known Secondary structure		T			.	T	T	T								S	S													.	.	T		T	T								G	G	G	T			G	G	G			B		S	S		B		S						S							B		T	T	T		S	B
Template Predicted Secondary structure					.																									.	.
Template SS confidence
		105	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P
Query Conservation
Alig confidence																	.	.														.	.	.	.	.																																									.	.	.	.	.
Template Conservation																	.	.														.	.	.	.	.																																									.	.	.	.	.
Template Sequence		D	Y	D	R	L	E	E	N	A	R	L	F	H	P	K	.	.	L	I	I	A	G	T	S	C	Y	S	R	N	L	.	.	.	.	.	D	Y	G	R	L	R	K	I	A	D	E	N	G	A	Y	L	M	A	D	M	A	H	I	S	G	L	V	V	A	G	V	V	P	S	P	F	E	H	C	H	.	.	.	.	.
Template Known Secondary structure																S	.	.							S	S			S			.	.	.	.	.												T	T								T	T	T							T	S	S			G	G	G	T		S	.	.	.	.	.
Template Predicted Secondary structure																	.	.														.	.	.	.	.																																									.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.						210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.						.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																															.	.	.	.	.
Query SS confidence																															.	.	.	.	.
Query Sequence		A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	.	.	.	.	.	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E
Query Conservation																															.	.	.	.	.
Alig confidence		.											.	.																	.	.	.	.	.																																		.	.	.	.	.	.	.	.
Template Conservation		.											.	.																																																							.	.	.	.	.	.	.	.
Template Sequence		.	V	V	T	T	T	T	H	K	T	L	.	.	R	G	C	R	A	G	M	I	F	Y	R	R	G	V	R	S	E	I	L	Y	N	L	E	S	L	I	N	S	A	V	F	P	G	L	Q	G	G	P	H	N	H	A	I	A	G	V	A	V	A	L	K	Q	A	M	.	.	.	.	.	.	.	.	T	P	E	F	K
Template Known Secondary structure		.						S	S	G	G	G	.	.				S									S	B					B												T	T	T	T			S																	T	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure		.											.	.																																																							.	.	.	.	.	.	.	.
Template SS confidence
			250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.									.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.							.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370														.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	.	.	.	.	.	.	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	S	G
Query Conservation																																									.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.															.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.
Template Sequence		E	Y	Q	R	Q	V	V	A	N	C	R	A	L	S	A	A	L	V	E	L	G	.	.	.	.	Y	K	I	V	T	G	G	S	D	N	H	L	I	L	V	D	L	R	S	K	G	T	D	G	G	R	A	E	K	V	L	E	A	C	S	I	A	C	N	K	N	T	C	P	G	D	K	S	A	L	R	P	S	G	L
Template Known Secondary structure																					T	T	.	.	.	.				G	G	G	S		S	S	S						G	G	G	G	T													T	T									S	S		S		T	T	S
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.					.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		375	.	.	.	.						380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.
Query SS confidence							.	.	.	.	.
Query Sequence		R	M	C	V	A	.	.	.	.	.	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation							.	.	.	.	.
Alig confidence							.	.	.	.	.
Template Conservation
Template Sequence		R	L	G	T	P	A	L	T	S	R	G	L	L	E	K	D	F	Q	K	V	A	H	F	I	H	R	G	I
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions