Job Description P04693 Confidence 99.71% Date Thu Jan 5 10:58:18 GMT 2012 Rank 230 Aligned Residues 286 % Identity 19% Template d1n8pa_ SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like Resolution 2.60

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	.	.	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V
Query Conservation																.	.
Alig confidence																.	.																	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.																.	.	.
Template Sequence		A	N	P	I	G	T	Y	E	Y	S	R	S	Q	N	P	N	R	E	N	L	E	R	A	V	A	A	L	E	N	A	Q	Y	.	.	.	.	.	.	.	.	.	.	G	L	A	F	S	S	G	S	A	T	T	A	T	I	L	.	.	.	Q	S	L	P	Q	G	S	H	A	V	S	I	G	D	V	Y	G	G	T	H
Template Known Secondary structure		S	S	B	S	S	S			B	T	T	T																T	T		S		.	.	.	.	.	.	.	.	.	.					S											.	.	.		T	S		S	S							S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.																.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.											.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		136	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.					.
Predicted Secondary structure								.	.	.	.																																																																		.	.	.	.
Query SS confidence								.	.	.	.																																																																		.	.	.	.
Query Sequence		A	I	F	A	G	A	.	.	.	.	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	.	.	.	.	L
Query Conservation								.	.	.	.																																																																		.	.	.	.
Alig confidence								.	.	.	.									.	.	.	.	.	.	.	.											.	.	.																						.	.	.													.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.											.	.	.																						.	.	.
Template Sequence		R	Y	F	T	K	V	A	N	A	H	G	V	E	T	S	F	T	N	.	.	.	.	.	.	.	.	D	L	L	N	D	L	P	Q	L	I	.	.	.	K	E	N	T	K	L	V	W	I	E	T	P	T	N	P	T	L	K	V	T	D	.	.	.	I	Q	K	V	A	D	L	I	K	K	H	A	A	G	Q	D	V
Template Known Secondary structure							T	S	T	T	T		S						S	.	.	.	.	.	.	.	.	S									S	.	.	.		S	S								S	S		T	T	T						.	.	.												T	T	T	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.											.	.	.																						.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.									.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Template Sequence		I	L	V	V	D	N	T	F	.	.	.	.	.	.	.	.	.	.	L	S	P	Y	I	S	N	P	L	N	F	G	A	D	I	V	V	H	S	A	T	K	Y	I	N	G	H	S	D	V	V	L	G	V	L	A	T	N	N	.	.	.	.	.	K	P	L	Y	E	R	L	Q	F	L	Q	N	A	I	G	A	I	P
Template Known Secondary structure								T	T	.	.	.	.	.	.	.	.	.	.	T							G	G	G	G	T		S						T	T	T	T	T	T		S	S										S		.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.											.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220						.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.																			.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	R	G	M	F
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.
Template Sequence		S	P	F	D	A	W	L	T	H	R	G	L	K	T	.	.	.	.	.	.	.	.	.	.	L	H	L	R	V	R	Q	A	A	L	S	A	N	K	I	A	E	F	L	A	A	D	K	E	N	V	V	A	V	N	Y	P	G	L	K	T	H	P	N	Y	D	V	V	L	K	Q	H	R	D	A	L	G	G	G	M	I
Template Known Secondary structure														T	T	.	.	.	.	.	.	.	.	.	.																				T	S		T	T	T							T	T	S	T	T	S	T	T								S	G	G	G				S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.											.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.				.	.	.	.	370	.	.	.																																.	.	.	.	.	.	380	.			.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure				.															.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query SS confidence				.															.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query Sequence		S	Y	.	T	G	L	S	A	A	Q	V	D	R	L	R	E	E	.	.	.	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	A	G	L	.	.	N	T	A	N	V	Q	R	V	A	K	A
Query Conservation				.															.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Alig confidence				.															.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.			.	.
Template Conservation																																																																		.
Template Sequence		S	F	R	I	K	G	G	A	E	A	A	S	K	F	A	S	S	T	R	L	F	T	L	A	E	S	L	G	G	I	E	S	L	L	E	V	P	A	V	M	T	H	G	G	I	P	K	E	A	R	E	A	S	G	V	F	D	D	L	V	R	I	S	V	.	G	I	E	D	T	D	D	L	L	E	D	I	K	Q	A
Template Known Secondary structure						S	S													S	S	S				S					S	S						T	T	T	T	T	S		S	S		T	T	T	T	T	T	T	S			T	T							.		S	S
Template Predicted Secondary structure																																																																		.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.		.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		393	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	Q	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions