Job Description P04693 Confidence 99.96% Date Thu Jan 5 10:58:18 GMT 2012 Rank 106 Aligned Residues 342 % Identity 14% Template d1kl1a_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.93

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.
Query Sequence		I	L	T	L	M	E	R	F	K	E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	.	.	.	.	.	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D
Query Conservation																																																	.	.	.	.	.
Alig confidence									.															.	.	.	.	.	.	.																			.	.	.	.	.
Template Conservation									.															.	.	.	.	.	.	.
Template Sequence		V	F	A	A	I	E	Q	.	E	R	K	R	Q	H	A	K	I	E	L	I	A	S	.	.	.	.	.	.	.	E	N	F	V	S	R	A	V	M	E	A	Q	G	S	V	L	T	N	K	Y	A	E	G	Y	P	G	R	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	E	L	A	R	E	R	A	K	Q	L	F
Template Known Secondary structure									.								S					T	T	.	.	.	.	.	.	.													T	S	G	G	G	G							T	T			S	S	S
Template Predicted Secondary structure									.															.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.								.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																														.	.	.																				.
Query SS confidence																																														.	.	.																				.
Query Sequence		H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	.	.	.	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	.	Y	D	E	A	T	N	G	V	R	F	N	D	L
Query Conservation																																														.	.	.																				.
Alig confidence						.	.	.	.	.																				.	.															.	.	.																				.
Template Conservation						.	.	.	.	.																				.	.
Template Sequence		G	A	E	H	.	.	.	.	.	A	N	V	Q	P	H	S	G	A	Q	A	N	M	A	V	Y	F	T	V	.	.	L	E	H	G	D	T	V	L	G	M	N	L	S	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	V	Q	Y	N	F	V	A	Y	G	V	D	P	E	T	H	V	I	D	Y	D	D	V
Template Known Secondary structure				S		.	.	.	.	.						S	S													.	.			T	T								G	G	G	T			G	G	G	T		T	T	S						S							B		T	T	T		S	B
Template Predicted Secondary structure						.	.	.	.	.																				.	.
Template SS confidence
		83	.	.	.						.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N
Query Conservation
Alig confidence												.	.						.	.										.	.	.																																								.	.	.	.	.	.	.	.
Template Conservation												.	.						.	.										.	.	.																																								.	.	.	.	.	.	.	.
Template Sequence		R	E	K	A	R	L	H	R	P	K	.	.	L	I	V	A	A	.	.	A	S	A	Y	P	R	I	I	D	.	.	.	F	A	K	F	R	E	I	A	D	E	V	G	A	Y	L	M	V	D	M	A	H	I	A	G	L	V	A	A	G	L	H	P	N	P	V	P	Y	A	H	.	.	.	.	.	.	.	.	F	V
Template Known Secondary structure											S	.	.						.	.		S	S			S				.	.	.												T								T	T	T						T	T	S	S			S	T	T	T		S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.						.	.										.	.	.																																								.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.			.	.	.	.	170			.	.	.	.	.	.	.	.	.				180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.									.	220
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R
Query Conservation
Alig confidence																					.	.	.	.	.	.	.																																				.	.	.	.
Template Conservation																					.	.	.	.	.	.	.																																				.	.	.	.
Template Sequence		T	T	T	T	H	K	T	L	R	G	P	R	G	G	M	I	L	C	Q	.	.	.	.	.	.	.	E	Q	F	A	K	Q	I	D	K	A	I	F	P	G	I	Q	G	G	P	L	M	H	V	I	A	A	K	A	V	A	F	G	E	A	L	.	.	.	.	Q	D	D	F	K	A	Y	A	K	R	V	V	D	N	A
Template Known Secondary structure					S	S	S	T	T				S								.	.	.	.	.	.	.												T	T	T	T		S	S																		.	.	.	.	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.																																				.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.								240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.					.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.					.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370															.	.	.	.	.	.	.	.	.						380
Predicted Secondary structure																														.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Query SS confidence																														.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Query Sequence		Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	.	.	.	.	T	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	S	G	R	M	C	V	A	.	.	.	.	.	G
Query Conservation																														.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Alig confidence															.	.														.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Conservation															.	.
Template Sequence		K	R	L	A	S	A	L	Q	N	E	G	F	T	.	.	L	V	S	G	G	T	D	N	H	L	L	L	V	D	L	R	P	Q	Q	L	T	G	K	T	A	E	K	V	L	D	E	V	G	I	T	V	N	K	N	T	I	P	Y	D	P	E	S	P	F	V	T	S	G	I	R	I	G	T	A	A	V	T	T	R	G
Template Known Secondary structure											T	T			.	.		G	G	G	S		S	S	S							G	G	G	T														T									T	T		S	S		T	T	T		S												T	T
Template Predicted Secondary structure															.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	G	L	E	E	M	D	E	I	A	A	I	I	G	L	V	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions