Job Description P04693 Confidence 99.94% Date Thu Jan 5 10:58:18 GMT 2012 Rank 135 Aligned Residues 329 % Identity 15% Template d1jf9a_ SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like Resolution 2.00

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.								.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.
Query Sequence		L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	.	.	.	.	.	.	.	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A
Query Conservation																																			.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.																	.	.	.	.	.	.											.
Template Conservation																																																										.	.	.	.	.	.											.
Template Sequence		A	Y	L	D	S	A	A	S	A	Q	K	P	S	Q	V	I	D	A	E	A	E	F	Y	R	H	G	Y	A	A	V	H	R	G	I	H	T	L	S	A	Q	A	T	E	K	M	E	N	V	R	K	R	A	S	L	F	I	.	.	.	.	.	.	N	A	R	S	A	E	E	L	V	F	.	V	R	G	T	T	E	G
Template Known Secondary structure						T	T	T																			T					S	S		S	S																					T	.	.	.	.	.	.	T		S		G	G	G				.		S	S
Template Predicted Secondary structure																																																										.	.	.	.	.	.											.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80							.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure										.	.																		.	.	.	.
Query SS confidence										.	.																		.	.	.	.
Query Sequence		L	K	V	G	A	D	F	L	.	.	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	.	.	.	.	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C
Query Conservation										.	.																		.	.	.	.
Alig confidence										.	.																		.	.	.	.																						.	.															.	.	.
Template Conservation																																																						.	.															.	.	.
Template Sequence		I	N	L	V	A	N	S	W	G	N	S	N	V	R	A	G	D	N	I	I	I	S	Q	M	E	H	H	A	N	I	V	P	W	Q	M	L	C	A	R	V	G	A	E	L	R	V	I	P	L	N	P	D	.	.	G	T	L	Q	L	E	T	L	P	T	L	F	D	E	.	.	.	K	T	R	L	L	A	I	T	H
Template Known Secondary structure																T	T							T	T			G	G	G	T											T								B		T	T	.	.	S		B		G	G	G							T	.	.	.	T								S
Template Predicted Secondary structure																																																						.	.															.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V
Query Conservation
Alig confidence												.	.	.																															.	.	.	.	.	.	.	.	.																		.	.
Template Conservation												.	.	.																															.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		V	S	N	V	L	G	T	E	N	P	.	.	.	L	A	E	M	I	T	L	A	H	Q	H	G	A	K	V	L	V	D	G	A	Q	A	V	M	H	H	P	V	D	V	.	.	.	.	.	.	.	.	.	Q	A	L	D	C	D	F	Y	V	F	S	G	H	K	L	Y	G	.	.	P	T	G	I	G	I	L	Y	V
Template Known Secondary structure		B		T	T	T			B			.	.	.											T	T								T	T	T	T	T	T	S					.	.	.	.	.	.	.	.	.				T		S						G	G	G	T	T	S	.	.		S	S
Template Predicted Secondary structure												.	.	.																															.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.										.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.																280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		K	E	A	L	L	Q	E	M	P	P	W	E	G	G	G	S	M	I	A	T	V	S	L	S	E	G	T	T	W	T	K	A	P	W	R	F	E	A	G	T	P	N	T	G	G	I	I	G	L	G	A	A	L	E	Y	V	S	.	.	.	.	.	A	L	G	L	N	N	I	A	E	Y	E	Q	N	L	M	H	Y	A
Template Known Secondary structure							T	T				S	S		S	S	S	S						T	T	T							T	T	G	G	G			S	S																		.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.						.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.					.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.																	.	.	.	.	.		.	380	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query SS confidence																												.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query Sequence		V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	.	.	.	.	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	.	A	G	L	N	T	A	N
Query Conservation																												.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Alig confidence										.	.	.																.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation										.	.	.
Template Sequence		L	S	Q	L	E	S	V	P	.	.	.	D	L	T	L	Y	G	P	Q	N	R	L	G	V	I	A	F	N	L	G	K	H	H	A	Y	D	V	G	S	F	L	D	N	Y	G	I	A	V	R	T	G	H	H	C	A	M	P	L	M	A	Y	Y	N	V	P	A	M	C	R	A	S	L	A	M	Y	N	T	H	E	E
Template Known Secondary structure						T	T	S	T	.	.	.	T					S		T	T			S							T	T													T	T								T	T								T	T		S									T	T
Template Predicted Secondary structure										.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.				.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		386	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	R	L	V	T	G	L	Q	R	I	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions