Phyre 2 alignment of P04693 with d1ibja

Job Description P04693
Confidence 99.87% Date Thu Jan 5 10:58:18 GMT 2012

Rank 193 Aligned Residues 285

% Identity 16% Template d1ibja_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 2.30

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	58	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure															.	.																																																															.	.
Query SS confidence															.	.																																																															.	.
Query Sequence	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	.	.	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	.	.
Query Conservation															.	.																																																															.	.
Alig confidence															.	.																.	.	.	.	.	.	.	.	.	.																	.	.	.																			.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Sequence	A	I	E	N	G	P	Y	D	Y	T	R	S	G	N	P	T	R	D	A	L	E	S	L	L	A	K	L	D	K	A	D	.	.	.	.	.	.	.	.	.	.	R	A	F	C	F	T	S	G	M	A	A	L	S	A	V	T	.	.	.	H	L	I	K	N	G	E	E	I	V	A	G	D	D	V	Y	G	G	S	D
Template Known Secondary structure	S	S				S		S	B	T	T	T																	T		S	.	.	.	.	.	.	.	.	.	.						S	S										.	.	.	T	T	S		T	T							S	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
	119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.											150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.

			134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure	.	.
Query SS confidence	.	.
Query Sequence	.	.	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L
Query Conservation	.	.
Alig confidence	.	.																			.	.	.	.	.	.	.										.	.	.																						.	.	.
Template Conservation																					.	.	.	.	.	.	.										.	.	.																						.	.	.
Template Sequence	R	L	L	S	Q	V	V	P	R	S	G	V	V	V	K	R	V	N	T	T	.	.	.	.	.	.	.	K	L	D	E	V	A	A	A	I	.	.	.	G	P	Q	T	K	L	V	W	L	E	S	P	T	N	P	R	Q	Q	I	S	D	.	.	.	I	R	K	I	S	E	M	A	H	A	Q	G	A	L	V	L	V
Template Known Secondary structure						T	S	G	G	G	T								T	T	.	.	.	.	.	.	.	S									.	.	.		S	S								S	S		T	T	T						.	.	.										T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.										.	.	.																						.	.	.
Template SS confidence
	186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.								.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

	212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	.	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F
Query Conservation																																											.
Alig confidence												.	.	.	.	.	.	.	.	.	.																						.											.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Sequence	D	N	S	I	M	S	P	V	L	S	R	.	.	.	.	.	.	.	.	.	.	P	L	E	L	G	A	D	I	V	M	H	S	A	T	K	F	I	A	G	H	S	D	V	M	A	G	V	L	A	V	K	G	.	.	.	.	.	.	E	K	L	A	K	E	V	Y	F	L	Q	N	S	E	G	S	G	L	A	P	F
Template Known Secondary structure			T	T	T		T	T	T			.	.	.	.	.	.	.	.	.	.	G	G	G	T	T		S						T	T	T	T	T	T		S	S											S	.	.	.	.	.	.														T	T		B
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template SS confidence
	253	.	.	.	.	.	.	260	.	.	.											.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.							.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

	291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.																.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	M	F	S	Y	T	G	L	S
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.
Template Sequence	D	C	W	L	C	L	R	G	I	K	T	.	.	.	.	.	.	.	.	.	.	M	A	L	R	I	E	K	Q	Q	E	N	A	R	K	I	A	M	Y	L	S	S	H	P	R	V	K	K	V	Y	Y	A	G	L	P	D	H	P	G	H	H	L	H	F	S	Q	A	K	G	A	G	S	V	F	S	F	I	T	G	S
Template Known Secondary structure										T	T	.	.	.	.	.	.	.	.	.	.																					T		T	T							T	T	S	T	T	S	T	T					T	T	T		S				S							S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.
Template SS confidence
	317	.	.	320	.	.	.	.	.	.	.											.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

	356	.	.	.	360	.	.	.	.	.	.	.	.	.	370																																			.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	S	G	R	M	C	V	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.			.	.
Template Conservation																																																										.			.	.
Template Sequence	V	A	L	S	K	H	L	V	E	T	T	K	Y	F	S	I	A	V	S	F	G	S	V	K	S	L	I	S	M	P	C	F	M	S	H	A	S	I	P	A	E	V	R	E	A	R	G	L	T	E	D	L	V	R	I	S	A	.	G	I	.	.	E	D	V	D	D	L	I	S	D	L	D	I	A	F
Template Known Secondary structure												S	S	S				S				S	S	S						T	T	T	T	T	T		S			S	S	S	S	S	S	S	S			T	T							.		S	.	.	S
Template Predicted Secondary structure																																																										.			.	.
Template SS confidence
	387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.		.	.			.	.	.	.	450	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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