Job Description P04693 Confidence 99.96% Date Thu Jan 5 10:58:18 GMT 2012 Rank 96 Aligned Residues 330 % Identity 15% Template d1dfoa_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.40

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																			.	.	.	.	.
Query SS confidence																																			.	.	.	.	.
Query Sequence		D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	.	.	.	.	.	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T
Query Conservation																																			.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.																			.	.	.	.	.																																.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.																																																							.	.	.	.	.
Template Sequence		E	H	I	E	L	I	A	S	.	.	.	.	.	.	.	E	N	Y	T	S	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	Q	L	A	I	D	R	A	K	E	L	F	G	A	D	.	.	.	.	.	Y	A	N	V	Q	P
Template Known Secondary structure			S					T	T	.	.	.	.	.	.	.													T	S	G	G	G	G							T	T			S	S	S																					T		S	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.																																																							.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.								.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.						90	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	.	.	.	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L
Query Conservation																																	.	.	.
Alig confidence																.	.																.	.	.																																										.	.
Template Conservation																.	.																																																												.	.
Template Sequence		H	S	G	S	Q	A	N	F	A	V	Y	T	A	L	.	.	L	E	P	G	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	K	L	Y	N	I	V	P	Y	G	I	D	A	T	G	H	I	D	Y	A	D	L	E	K	Q	A	K	E	H	K	P	K	.	.	M	I	I
Template Known Secondary structure		S	S													.	.			T	T								T	T	T	T			G	G	G	T		T	T	S						S							B		S	S	S	S	B															S	.	.
Template Predicted Secondary structure																.	.																																																												.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G
Query Conservation
Alig confidence				.	.										.	.	.																																								.	.	.	.	.	.	.	.
Template Conservation				.	.										.	.	.																																								.	.	.	.	.	.	.	.
Template Sequence		G	G	.	.	F	S	A	Y	S	G	V	V	D	.	.	.	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	V	A	G	L	V	A	A	G	V	Y	P	N	P	V	P	H	A	H	.	.	.	.	.	.	.	.	V	V	T	T	T	T	H	K	T	L	A	G	P	R	G	G	L
Template Known Secondary structure				.	.		S	S			S				.	.	.											T	T								T	T	T							T	S	S				T	T	T	S	S	.	.	.	.	.	.	.	.						S	S	S	T	T				S
Template Predicted Secondary structure				.	.										.	.	.																																								.	.	.	.	.	.	.	.
Template SS confidence
		172	.			.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.									.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.																											.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.																											.	.	.	.
Template Sequence		I	L	A	K	G	G	S	E	E	L	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	.	.	.	.	.	.	.	.	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A	M	V	E	V	F	L	E	R	G	.	.	.	.
Template Known Secondary structure					S	S														T	T	T	T		S	S																T	T	.	.	.	.	.	.	.	.	S																								T	T	.	.	.	.
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.																											.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280									.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.							.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.															.	.	.	.	.	.						380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.
Query SS confidence																.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.
Query Sequence		F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	.	.	.	.	.	.	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	A	.	.	.	.	.	G	L	N	T	A	N	V	Q	R	V	A	K	A	F
Query Conservation																.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.
Alig confidence																.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.
Template Conservation
Template Sequence		Y	K	V	V	S	G	G	T	D	N	H	L	F	L	V	D	L	V	D	K	N	L	T	G	K	E	A	D	A	A	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	T	S	G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E	A	E	A	K	E	L	A	G	W	M
Template Known Secondary structure					G	G	G	S		S	S	S							G	G	G	T													T	T									T	T		S	S		T	T	T		S												T	T
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		394	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	D	V	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions