Job Description P04693 Confidence 99.90% Date Thu Jan 5 10:58:18 GMT 2012 Rank 171 Aligned Residues 300 % Identity 13% Template d1c4ka2 SCOP info PLP-dependent transferase-like PLP-dependent transferases Ornithine decarboxylase major domain Resolution 2.70

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	.	I	F	A	G	A	G	F	E	V	S	T	Y	P	W
Query Conservation																																																																			.
Alig confidence													.	.	.	.	.	.	.	.										.																.	.																				.
Template Conservation													.	.	.	.	.	.	.	.										.																.	.
Template Sequence		A	V	A	A	E	K	H	A	A	R	V	.	.	.	.	.	.	.	.	Y	N	A	D	K	T	Y	F	V	.	L	G	G	S	S	N	A	N	N	T	V	T	S	A	L	.	.	V	S	N	G	D	L	V	L	F	D	R	N	N	H	K	S	V	Y	N	S	A	L	A	M	A	G	G	R	P	V	Y	L	Q	T
Template Known Secondary structure													.	.	.	.	.	.	.	.	T	T		S						.	S	S														.	.			T	T							T	T										T	T	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.										.																.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.									.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		151	.	.	.	.	.																	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	D	E	A	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.									.	.	.
Template Conservation																																																	.	.									.	.	.
Template Sequence		N	R	N	P	Y	G	F	I	G	G	I	Y	D	S	D	F	D	E	K	K	I	R	E	L	A	A	K	V	D	P	E	R	A	K	W	K	R	P	F	R	L	A	V	I	Q	L	G	.	.	T	Y	D	G	T	I	Y	N	.	.	.	A	H	E	V	V	K	R	I	G	H	L	C	D	Y	I	E	F	D	S	A
Template Known Secondary structure					T	T								G	G	G	S									T	T	T	S	S					T		S			B	S						S	B	.	.		T	T	S					.	.	.									G	G	G	B	S							T
Template Predicted Secondary structure																																																	.	.									.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		215		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.							.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure			.																					.	.	.																																	.	.	.	.	.	.
Query SS confidence			.																					.	.	.																																	.	.	.	.	.	.
Query Sequence		Y	.	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	.	.	.	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	.	.	.	.	.	.	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y
Query Conservation			.																					.	.	.																																	.	.	.	.	.	.
Alig confidence			.																					.	.	.																.																	.	.	.	.	.	.
Template Conservation																																										.
Template Sequence		W	V	G	Y	E	Q	F	I	P	M	M	R	N	S	S	P	L	L	I	D	D	L	G	P	E	D	P	G	I	I	V	V	Q	S	V	H	K	Q	Q	A	.	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	L	R	Y	C	D	H	K	H	F	N	N	S	F	N	L	F	M	S	T	S	P
Template Known Secondary structure		T			G	G	G	S	S	G	G	G	G	G	G		T	T	S						T	T	S													S	S	.			T	T									G	G	G	T	T	S	T	T															S		S	S
Template Predicted Secondary structure																																										.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.
Template Sequence		F	Y	P	M	Y	A	A	L	D	V	N	A	A	M	Q	E	.	.	.	.	.	.	.	.	G	E	A	G	R	K	L	W	H	D	L	L	I	T	T	I	E	A	R	K	K	L	I	K	A	G	S	M	F	R	P	F	V	P	P	V	V	N	G	K	K	W	E	D	G	D	T	E	D	M	A	N	N	I	D	Y
Template Known Secondary structure																	S	.	.	.	.	.	.	.	.																									T	T		S	S			S	S		S			T	T			G	G	G	S						T	T		G	G	G
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.									.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
																								335	.	.	.	.	340	.					.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370					.	.	.	.	.	.	.	.		.	380	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.																														.	.	.	.									.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.																														.	.	.	.									.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	R	N	F	D	Y	.	.	.	.	L	L	N	Q	R	G	M	F	S	Y	T	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	.	.	.	.	I	A	S	G	R	M	C	V	.	A	G	L	N	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.																														.	.	.	.									.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.																														.	.	.	.									.
Template Conservation
Template Sequence		W	R	F	E	K	G	A	K	W	H	A	Y	E	G	Y	G	D	N	Q	Y	Y	V	D	P	N	K	F	M	L	T	T	P	G	I	N	P	E	T	G	D	Y	E	D	F	G	V	P	A	T	I	V	A	N	Y	L	R	D	H	G	I	I	P	E	K	S	D	L	N	S	I	L	F	L	M	T	P	A	E	T	P
Template Known Secondary structure		G	B			T	T		T	T	T			T	T			T	T						T	T							S	S			T	T	T	T				S	S														T	T				S				S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	V	Q	R	V	A	K	A	F	A	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	M	N	N	L	I	T	Q	L	L	Q	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		550	.	.	.	.	.	.	.	.	.	560	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions