Return to main results Retrieve Phyre Job Id

Job DescriptionP04693
Confidence99.90%DateThu Jan 5 10:58:18 GMT 2012
Rank173Aligned Residues363
% Identity15%Templated1ax4a_
SCOP infoPLP-dependent transferase-like PLP-dependent transferases Beta-eliminating lyases
Resolution2.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.... .....40.........50.........60.........70........
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Query Sequence  QKVDAYAGDPILTLMERFKEDPRSDKVNLSIG. . . . LYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHA
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Template Sequence  KMVEKIRVPSREEREAALKEAGY. NPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMI. . . . . . TGDEAYAGSRNYYDLKDK
Template Known Secondary structure  S








TTS.
GGGS
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   12.......20.........30.... .....40.........50.........60...... ...70.........80....
 
   7980.........90.........100.........110.........120... ......130.........140.........150.
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Query Sequence  IAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESG. . . . . . . VWVSDPTWENHVAIFAGAGFEVSTYPWY
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Template Sequence  AKELF. . . . . . NYD. . . . YIIPAHQGRGAENILFPVL. . LKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTE
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SS
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TT

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G
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   85.... 90.. .......100.........110. ........120.........130.........140.........150..
 
   152... ....160.........170... ......180...... ...190.........200.........210... ..
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Query Sequence  DEAT. . . . . . . . NGVRFNDLLATLKTLPAR. SIVLLHPCCHNPT. GADLTNDQWDAVIEILKARELIPFLDI. . . . . . AY
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Template Sequence  KAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAY
Template Known Secondary structure  GGG
TTS

TTTT
B

GGGSSBTTTTSB


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   153......160.........170.........180.........190.........200.........210.........220.........230..
 
   216...220.........230.........240.........250.........260.........270.........280.........290.....
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Query Sequence  QGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVV
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Template Sequence  FIKARDPKYKNATIKEVIFDMYKYADALTMSA. KDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAM
Template Known Secondary structure 
GGGTT

GGG
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   233......240.........250.........260.... .....270.........280.........290.........300.........310.
 
   296...300.........310.........320.........330.........340.........350...... ...360..
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Query Sequence  AAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA. . . . . . . . . . . . . AQVDRL
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Template Sequence  VQGLE. . . . . . . . EGTEEEYLHYRIGQVKYLGDRLREAGIP. . . . IQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINAL
Template Known Secondary structure  ........TT
TT

....B
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SSSTTT
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   313.... ..320.........330.........340..... ....350.........360.........370.........380
 
   363......370. ....... .380. ........390.......
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Query Sequence  REEFGVYLI. . . . . . . . . . . . . . . . . . . . . ASGRMCV. AGL. NTANVQRVAKAFAAVM
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Template Sequence  YLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLK
Template Known Secondary structure 

S
B
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   381........390.........400.........410.........420.........430........
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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