Job Description P04693 Confidence 99.94% Date Thu Jan 5 10:58:18 GMT 2012 Rank 123 Aligned Residues 320 % Identity 13% Template c3uwcA_ PDB info PDB header:transferase Chain: A: PDB Molecule:nucleotide-sugar aminotransferase; PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp Resolution 1.80 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L
Query Conservation
Alig confidence																									.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	S	Y	L	E	R	Q	F	A	D	I	E	P	Y	L	N	D	L	R	E	F	I	K	.	.	.	.	T	A	D	F	T	L	G	A	E	L	E	K	F	E	K	R	F	A	A	L	H	N	A	P	H	.	.	.	.	.	.	.	.	.	.	A	I	G	V	G	T	G	T	D	A	L	A	X	S	F	K	X	L
Template Known Secondary structure		S							T	S	S														.	.	.	.		T			S	S															T	T		S		.	.	.	.	.	.	.	.	.	.					S													T
Template Predicted Secondary structure																									.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.					.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.											.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W
Query Conservation
Alig confidence			.																																					.	.															.	.	.	.	.	.																	.	.	.
Template Conservation			.																																					.	.															.	.	.	.	.	.																	.	.	.
Template Sequence		N	.	I	G	A	G	D	E	V	I	T	C	A	N	T	F	I	A	S	V	G	A	I	V	Q	A	G	A	T	P	V	L	V	D	S	E	N	G	.	.	Y	V	I	D	P	E	K	I	E	A	A	I	T	D	.	.	.	.	.	.	K	T	K	A	I	X	P	V	H	Y	T	G	N	I	A	D	.	.	.	X
Template Known Secondary structure		T	.			T	T							S	S	S											T	T								B		T	T	.	.	S	S	B		G	G	G	T	G	G	G			T	.	.	.	.	.	.	T							B		G	G	G					.	.	.
Template Predicted Secondary structure			.																																					.	.															.	.	.	.	.	.																	.	.	.
Template SS confidence
		71		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q
Query Conservation
Alig confidence																																		.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		P	A	L	A	K	I	A	K	K	H	N	L	H	I	V	E	D	A	C	Q	T	I	L	G	R	I	N	D	K	F	V	G	.	.	.	.	.	.	S	W	G	Q	F	A	C	F	S	L	H	P	L	K	N	L	N	V	W	S	D	A	G	V	I	I	T	H	S	D	E	Y	A	E	K	L	R	L	Y	R	N	H
Template Known Secondary structure											T	T								T	T		T	T				T	T			T	T	.	.	.	.	.	.	S	S	S	S							S	S	S	S	S	S			S	S								S												T	B	T
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170							.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		276	.	.	.	280	.	.	.	.	.	.	.						.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																																																														.	.
Query SS confidence														.	.	.	.	.																																																														.	.
Query Sequence		L	K	A	T	V	R	R	N	Y	S	S	P	.	.	.	.	.	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	.	.
Query Conservation														.	.	.	.	.																																																														.	.
Alig confidence														.	.	.	.	.															.	.	.	.	.	.	.	.	.	.																																						.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	I	N	R	D	V	C	V	E	Y	G	I	N	C	R	X	D	T	I	Q	A	V	I	A	N	R	L	X	N	Q	.	.	.	.	.	.	.	.	.	.	L	E	T	I	T	E	K	R	R	G	I	A	H	L	Y	D	Q	S	F	V	D	L	S	E	F	I	D	V	P	V	R	R	E	G	V	Y	H	V	F
Template Known Secondary structure		T				T	T			S	S				B		B													G	G	G	.	.	.	.	.	.	.	.	.	.																			T	G	G	G	T	T	T								T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.											.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
				349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.																																.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query SS confidence		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query Sequence		.	.	F	S	Y	T	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	.	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A
Query Conservation		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Alig confidence		.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation
Template Sequence		H	I	Y	V	L	R	V	K	Y	R	D	Q	L	F	Q	Y	L	K	D	N	G	I	E	V	K	I	H	Y	P	I	A	X	H	L	Q	P	A	A	K	S	L	G	Y	Q	Q	G	D	F	P	X	A	E	K	H	G	E	A	V	I	T	L	P	A	H	P	Y	L	T	E	E	E	I	N	Y	I	I	K	K	V	R
Template Known Secondary structure		S	S						T	T											T	T	B			B		S		S	S		G	G	G	S	G	G	G	G	G	G				T	T	S																		T	T	S
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		395	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	F	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		363	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions