Phyre 2 alignment of P04693 with c3qi6B

Job Description P04693
Confidence 99.88% Date Thu Jan 5 10:58:18 GMT 2012

Rank 187 Aligned Residues 274

% Identity 14% Template c3qi6B_

PDB info PDB header:lyase Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs); PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99

Resolution 1.91 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.									.	.																.	.
Template Conservation										.	.	.	.	.	.	.	.									.	.																.	.
Template Sequence	A	L	E	A	A	L	A	A	V	.	.	.	.	.	.	.	.	E	D	A	A	F	G	R	A	.	.	F	S	S	G	M	A	A	A	D	C	A	L	R	A	M	.	.	L	R	P	G	D	H	V	V	I	P	D	D	A	Y	G	G	T	F	R	L	I	D	K	V	F	T	G	W	N	V	E	Y	T	P	V	A
Template Known Secondary structure										.	.	.	.	.	.	.	.	T	T		S					.	.		S	S													.	.			T	T							T	T												T	G	G	G	G	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.									.	.																.	.
Template SS confidence
	66	.	.	.	70	.	.	.	.									.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

	154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A
Query Conservation
Alig confidence	.	.	.														.	.	.																				.	.	.																																	.	.	.	.	.	.	.
Template Conservation	.	.	.														.	.	.																				.	.	.																																	.	.	.	.	.	.	.
Template Sequence	.	.	.	L	A	D	L	D	A	V	R	A	A	I	R	P	.	.	.	T	T	R	L	I	W	V	E	T	P	T	N	P	L	L	S	I	A	D	.	.	.	I	A	G	I	A	Q	L	G	A	D	S	S	A	K	V	L	V	D	N	T	F	A	S	P	A	L	Q	Q	P	L	S	L	.	.	.	.	.	.	.
Template Known Secondary structure	.	.	.	T	T											T	.	.	.	T								S	S		T	T	T						.	.	.											T	T								T	T	T		T	T	T			G	G	G	G	.	.	.	.	.	.	.
Template Predicted Secondary structure	.	.	.														.	.	.																				.	.	.																																	.	.	.	.	.	.	.
Template SS confidence
				134	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.

	234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E
Query Conservation
Alig confidence	.	.	.																												.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.																												.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	G	A	D	V	V	L	H	S	T	T	Y	I	G	G	H	S	D	V	V	G	G	A	L	V	T	N	D	.	.	.	.	.	.	E	E	L	D	Q	S	F	A	F	L	Q	N	G	A	G	A	V	P	G	P	F	D	A	Y	L	T	M	R	G	L	K	T	.	.	.	.	.	.	.	.	.	.	L	V
Template Known Secondary structure	.	.	.	T		S										S		S	S										S		.	.	.	.	.	.																															T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure	.	.	.																												.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.							.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.											.	.

	314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.																	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.				.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.												.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.												.
Query Sequence	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	G	M	F	S	Y	T	G	L	S	A	A	Q	V	D	R	L	.	.	.	R	E	E	F	G	V	Y	L	I	A	S	.
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.												.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.												.
Template Conservation
Template Sequence	L	R	M	Q	R	H	S	E	N	A	A	A	V	A	E	F	L	A	E	H	P	A	I	S	T	V	L	Y	P	G	L	P	S	H	P	G	H	A	V	A	A	R	Q	M	R	G	F	G	G	M	V	S	V	R	M	R	A	G	R	T	A	A	E	Q	L	C	A	K	T	N	I	F	I	L	A	E	S	L	G	S
Template Known Secondary structure																			T		T	T							T	T	S	T	T	S	T	T									S	S			S							T	T													S	S	S				S
Template Predicted Secondary structure
Template SS confidence
	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

																							374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.			.	.
Template Conservation																												.			.	.
Template Sequence	V	E	S	L	I	E	H	P	S	A	M	T	G	S	Q	L	E	V	P	D	D	L	V	R	L	S	V	.	G	I	.	.	E	D	V	A	D	L	L	D	D	L	K	Q	A	L
Template Known Secondary structure	S	S						T	T	T					S					T	T							.		S	.	.	S
Template Predicted Secondary structure																												.			.	.
Template SS confidence
	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.			.	370	.	.	.	.	.	.	.	.	.	380	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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