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Job DescriptionP04693
Confidence100.00%DateThu Jan 5 10:58:18 GMT 2012
Rank26Aligned Residues372
% Identity19%Templatec3qguB_
PDB info PDB header:transferaseChain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20. ........30.........40.........50.........60.. .......70....
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Query Sequence  QKVDAYAGDPILTLMERFK. . . . . EDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHG. . . ASLYLPMEGLNC
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Template Sequence  ENFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIG. . . . . DTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGA
Template Known Secondary structure 

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   41........50.........60.........70....... ..80.........90.........100.........110.....
 
   75....80.........90.........100.........110.........120.........130.........140.........150....
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Query Sequence  YRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEA
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Template Sequence  LREAVASTFYGHAG. . RAADEIFI. . SDGSKCDIARIQMMF. . . GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDG
Template Known Secondary structure  TTTT..

GGG..S
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TTT
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B
SSSBTT
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   116...120......... 130....... ..140.........150.. .......160.........170.........180........
 
   155....160.........170 .........180.........190.........200.........210.........220.........230..
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Query Sequence  TNGVRFNDLLATLKTL. . PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAI
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Template Sequence  IEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDC. PKTIYEI
Template Known Secondary structure 

GGGTT


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TTGGG


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   189190.........200.........210.........220.........230.........240.........250.........260 .......
 
   233......240.........250.........260.........270.... .....280.........290.........300.........310.
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Query Sequence  ASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLG. QLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAE
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Template Sequence  PGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQ. . . . . PEGLKE
Template Known Secondary structure  TTGGGT
SGGGT
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TT
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   268.270.........280.........290.........300.........310.........320.........330...... ...340..
 
   312.......320.........330.........340.........350..... ....360.........370... ....
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Query Sequence  VEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS. . . . AAQVDRLREEFGVYLIAS. . . . . . . . . . GRMC
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Template Sequence  MNAMIKFYKENAQILKTTFTEMG. . . . FSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS
Template Known Secondary structure  TT....

SSSSS
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GGGG
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   343......350.........360..... ....370.........380.........390.........400.........410........
 
   378.380.........390.......
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Query Sequence  VAGLNTANVQRVAKAFAAVM
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Template Sequence  AF. GSRENILEAVRRFKEAY
Template Known Secondary structure 

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   419420 .........430.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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