Job Description P04693 Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012 Rank 16 Aligned Residues 358 % Identity 18% Template c3pplB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution Resolution 1.25 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.
Query SS confidence																															.	.	.	.
Query Sequence		P	I	L	T	L	M	E	R	F	K	E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	.	.	.	.	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D
Query Conservation																															.	.	.	.
Alig confidence													.	.											.	.	.				.	.	.	.																																												.	.	.	.
Template Conservation													.	.											.	.	.																																																			.	.	.	.
Template Sequence		D	I	K	R	K	F	D	E	L	K	S	.	.	K	N	L	K	L	D	L	T	R	G	.	.	.	K	P	S	S	E	Q	L	D	F	A	D	E	L	L	A	L	P	G	K	G	D	F	K	A	A	D	G	T	D	V	R	N	Y	G	G	L	D	G	I	V	D	I	R	Q	I	W	A	D	L	L	.	.	.	.
Template Known Secondary structure													.	.	T										.	.	.									T	T	G	G	G	G	G		S		T	T			B		T	T	S		B	T	T	S	S			S	S														.	.	.	.
Template Predicted Secondary structure													.	.											.	.	.																																																			.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.													.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.										.	.																			.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation		.	.										.	.																																																																		.	.
Template Sequence		.	.	G	V	P	V	E	Q	V	L	A	.	.	G	D	A	S	S	L	N	I	X	F	D	V	I	S	W	S	Y	I	F	G	N	N	D	S	V	Q	P	W	S	K	E	E	T	V	K	W	I	C	P	V	P	G	Y	D	R	H	F	S	I	T	E	R	F	G	F	E	X	I	S	V	P	X	N	E	D	.	.
Template Known Secondary structure		.	.	T	S		G	G	G				.	.		S	S																			T	T		S	S		G	G	G	S	S									S												T	T										T	T	.	.
Template Predicted Secondary structure		.	.										.	.																																																																		.	.
Template SS confidence
				91	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.					.	.	.	230
Predicted Secondary structure																																															.																											.	.	.	.
Query SS confidence																																															.																											.	.	.	.
Query Sequence		N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	.	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	.	.	.	.	Y	A	I	R
Query Conservation																																															.																											.	.	.	.
Alig confidence		.														.																															.																											.	.	.	.
Template Conservation		.														.
Template Sequence		.	G	P	D	X	D	A	V	E	E	L	V	K	N	.	P	Q	V	K	G	X	W	V	V	P	V	F	S	N	P	T	G	F	T	V	T	E	D	V	A	K	R	L	S	A	X	E	T	A	A	P	D	F	R	V	V	W	D	N	A	Y	A	V	H	T	L	T	D	E	F	P	E	V	I	D	I	V	G	L	G
Template Known Secondary structure		.											T	T	S	.	T	T									S	S		T	T	T																		S	S	T	T								T	T	T	T		B	S	S	S
Template Predicted Secondary structure		.														.
Template SS confidence
			165	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A
Query Conservation
Alig confidence																						.																								.	.	.	.	.	.	.																					.	.	.
Template Conservation																						.																								.	.	.	.	.	.	.																					.	.	.
Template Sequence		E	A	A	G	N	P	N	R	F	W	A	F	T	S	T	S	K	I	T	L	.	A	G	A	G	V	S	F	F	L	T	S	A	E	N	R	K	W	Y	T	G	H	A	G	.	.	.	.	.	.	.	I	R	G	I	G	P	N	K	V	N	Q	L	A	H	A	R	Y	F	G	D	.	.	.	A	E	G	V	R	A
Template Known Secondary structure				T	T		T	T								S	T	T	T	S		.	T	T	T	S																				.	.	.	.	.	.	.				S																S	.	.	.
Template Predicted Secondary structure																						.																								.	.	.	.	.	.	.																					.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.								.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.				.	.	.	.	310	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.				.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																									.																								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.																								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	.	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	S	A	.	.	.	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	G	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.																								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.																								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	X	R	K	H	A	A	S	L	A	P	K	F	N	K	V	L	E	I	L	D	S	R	L	A	E	Y	G	V	A	Q	W	T	V	P	A	G	G	Y	F	I	S	L	D	V	V	P	G	T	A	S	R	V	A	E	L	A	K	E	A	G	I	A	L	T	G	A	G	S	S	Y	P	L	R	Q	D	P	E	N	K
Template Known Secondary structure																										G	G	G	T								S	B	S	S							S	T	T												T	T						T	T	T	T	S	G	G	G			T	T	S
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
				375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	M	C	V	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		N	L	R	L	A	P	S	L	P	P	V	E	E	L	E	V	A	X	D	G	V	A	T	C	V
Template Known Secondary structure								S	S	S
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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