Job Description P04693 Confidence 99.94% Date Thu Jan 5 10:58:18 GMT 2012 Rank 122 Aligned Residues 324 % Identity 12% Template c3pj0D_ PDB info PDB header:lyase Chain: D: PDB Molecule:lmo0305 protein; PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution Resolution 1.80 Å

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		38	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure								.	.	.
Query SS confidence								.	.	.
Query Sequence		N	E	D	G	I	I	.	.	.	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F
Query Conservation								.	.	.
Alig confidence								.	.	.																					.	.																										.	.	.	.	.	.
Template Conservation																															.	.																										.	.	.	.	.	.
Template Sequence		Q	K	T	P	Y	K	L	G	G	N	G	P	R	N	V	G	V	L	T	E	A	L	Q	N	I	D	D	N	L	.	.	E	S	D	I	Y	G	N	G	A	V	I	E	D	F	E	T	K	I	A	K	I	L	G	K	Q	.	.	.	.	.	.	S	A	V	F	F	P	S	G	T	X	A	Q	Q	I	A	L	R	I
Template Known Secondary structure					S			S	S	B	S	S			S								T	T	T	S		T	T		.	.				B	T	T	B	S															T		S	.	.	.	.	.	.						S
Template Predicted Secondary structure																															.	.																										.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.							.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	.	.	.	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T
Query Conservation																						.	.	.
Alig confidence																						.	.	.																.	.	.																.	.	.
Template Conservation																																								.	.	.																.	.	.
Template Sequence		W	A	D	R	K	E	N	R	R	V	A	Y	H	P	L	S	H	L	E	I	H	E	Q	D	G	L	K	E	L	Q	Q	I	T	P	L	L	L	G	.	.	.	T	A	N	Q	L	L	T	I	D	D	I	K	S	L	R	.	.	.	E	P	V	S	S	V	L	I	E	L	P	Q	R	E	I	G	G	Q	L	P	A
Template Known Secondary structure							T								T	T						S	S	T	T														S	.	.	.		T	T	S									T		S	.	.	.	S			S						S	S	B	G	G	G	T	S	B
Template Predicted Secondary structure																																								.	.	.																.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R
Query Conservation
Alig confidence																																														.	.	.	.										.	.	.
Template Conservation																																														.	.	.	.										.	.	.
Template Sequence		F	E	E	L	E	K	I	S	E	Y	C	H	E	Q	G	I	S	L	H	L	D	G	A	R	L	W	E	I	T	P	F	Y	Q	K	S	A	E	E	I	C	A	L	F	D	.	.	.	.	S	V	Y	V	S	F	Y	G	I	.	.	.	G	G	I	A	G	A	I	L	A	G	N	D	D	F	V	Q	E	A	K	I
Template Known Secondary structure																T								T	T		G	G	G					T								T	T		S	.	.	.	.										.	.	.			S	S
Template Predicted Secondary structure																																														.	.	.	.										.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.					200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y
Query Conservation
Alig confidence					.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Sequence		W	K	R	.	.	.	.	.	R	Y	G	G	D	L	I	S	L	Y	P	Y	I	L	S	A	D	Y	Y	.	.	.	.	.	.	.	.	.	.	F	E	K	R	I	G	K	X	A	E	Y	F	E	A	A	K	G	L	A	E	R	F	N	S	C	S	G	V	K	T	V	P	E	V	P	V	S	N	X	F	H	V	Y
Template Known Secondary structure					.	.	.	.	.		T	T				S													.	.	.	.	.	.	.	.	.	.					G	G	G																	T	S	T	T					S	S	S		S	S	S
Template Predicted Secondary structure					.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.						.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.											.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		352	.	.	.	.	.	.					.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.											.	.	.	.	.					380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.																	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Query SS confidence									.	.	.	.																	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Query Sequence		T	G	L	S	A	A	Q	.	.	.	.	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	G	.	.	.	.	.	.	.	.	.	.	R	M	C	V	A	.	.	.	.	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation									.	.	.	.																	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Alig confidence									.	.	.	.																	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Template Conservation
Template Sequence		F	E	N	S	A	D	E	I	G	A	I	L	T	K	I	Q	D	E	T	G	V	G	I	S	G	Y	L	Q	E	K	S	A	D	V	C	A	F	E	V	S	V	G	D	A	F	A	E	I	P	A	K	N	L	E	L	V	F	R	C	L	E	K	E	L
Template Known Secondary structure			S	S																						S							T	T								B		G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions