Job Description P04693 Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012 Rank 69 Aligned Residues 352 % Identity 18% Template c3op7A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution Resolution 1.70 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	A	G	D	P	I	L	T	L	M	E	R	F	K	E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A
Query Conservation
Alig confidence																	.	.	.																																																													.	.
Template Conservation																	.	.	.																																																													.	.
Template Sequence		K	L	P	R	F	G	V	E	E	W	L	N	V	H	E	.	.	.	N	S	A	I	Y	D	I	A	G	V	S	I	S	S	L	T	L	E	E	L	F	A	L	S	G	T	N	P	E	D	F	Y	K	K	L	Q	G	T	K	L	N	Y	G	W	I	E	G	S	P	A	F	K	K	S	V	S	Q	L	Y	T	.	.
Template Known Secondary structure		S	S													G	.	.	.	G	G		S							S														T												T	S			S	S			T	T											T	T	S	S	.	.
Template Predicted Secondary structure																	.	.	.																																																													.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T
Query Conservation
Alig confidence		.	.	.										.	.																.	.
Template Conservation		.	.	.										.	.																.	.
Template Sequence		.	.	.	G	V	K	P	E	Q	I	L	Q	.	.	T	N	G	A	T	G	A	N	L	L	V	L	Y	S	L	.	.	I	E	P	G	D	H	V	I	S	L	Y	P	T	Y	Q	Q	L	Y	D	I	P	K	S	L	G	A	E	V	D	L	W	Q	I	E	E	E	N	G	W	L	P	D	L	E	K	L	R	Q	L
Template Known Secondary structure		.	.	.	S			G	G	G				.	.		S														.	.			T	T								S	S		T									T	T										G	G	G	T	T
Template Predicted Secondary structure		.	.	.										.	.																.	.
Template SS confidence
					77	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S
Query Conservation
Alig confidence								.	.	.																																																					.	.	.	.	.	.
Template Conservation								.	.	.																																																					.	.	.	.	.	.
Template Sequence		I	R	P	T	T	K	.	.	.	X	I	C	I	N	N	A	N	N	P	T	G	A	V	X	D	R	T	Y	L	E	E	L	V	E	I	A	S	E	V	G	A	Y	I	L	S	D	E	V	Y	R	S	F	S	E	L	D	V	P	S	I	I	.	.	.	.	.	.	E	V	Y	D	K	G	I	A	V	N	S	L	S
Template Known Secondary structure				T	T			.	.	.						S	S		T	T	T																		T	T	T									S				S	S	S							.	.	.	.	.	.				T	T
Template Predicted Secondary structure								.	.	.																																																					.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.							.	.	210	.	.	.	.	.	.	.	.	.	220
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L
Query Conservation
Alig confidence			.															.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation			.															.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Sequence		T	.	Y	S	L	P	G	I	R	I	G	W	V	A	A	N	.	.	.	.	.	.	.	H	Q	V	T	D	I	L	R	D	Y	R	D	Y	T	X	I	C	A	G	V	F	D	D	L	V	A	Q	L	A	L	A	H	.	.	.	.	.	.	Y	Q	E	I	L	E	R	N	R	H	I	L	E	E	N	L	A	I	L
Template Known Secondary structure			.		S		G	G	G									.	.	.	.	.	.	.								T	T	T	G	G	G	T	T	S																T	.	.	.	.	.	.
Template Predicted Secondary structure			.															.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template SS confidence
		222		.	.	.	.	.	.	.	230	.	.	.	.	.	.								.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.							.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.						.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.									.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																															.	.	.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.																			.	.	.	.	.	.	.	.
Query Sequence		V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	S	.	.	.	.	.	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	G	R	M	C	V	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F
Query Conservation																															.	.	.	.	.																			.	.	.	.	.	.	.	.
Alig confidence										.	.	.																			.	.	.	.	.																			.	.	.	.	.	.	.	.							.
Template Conservation										.	.	.																																																								.
Template Sequence		D	Q	W	I	E	E	E	P	.	.	.	L	V	S	Y	I	R	P	A	V	V	S	T	S	F	V	K	I	A	V	D	X	P	X	E	D	F	C	L	Q	L	L	Q	E	H	G	V	L	L	V	P	G	N	R	F	E	R	D	G	Y	V	R	L	G	F	A	.	C	E	Q	E	T	L	I	K	G	L	E	K	L
Template Known Secondary structure									T	.	.	.	T							S	S	S	S									S	S																				G	G	G	G	T		T	T								.	S
Template Predicted Secondary structure										.	.	.																																																								.
Template SS confidence
		288	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.
		394	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Q	F	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions