Job Description P04693 Confidence 99.91% Date Thu Jan 5 10:58:18 GMT 2012 Rank 159 Aligned Residues 347 % Identity 12% Template c3nuiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyruvate transaminase; PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17 Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L
Query Conservation
Alig confidence																		.	.														.	.																																.	.	.	.
Template Conservation																		.	.														.	.																																.	.	.	.
Template Sequence		L	D	A	N	S	G	L	W	N	M	V	A	G	F	D	H	.	.	K	G	L	I	D	A	A	K	A	Q	Y	E	R	.	.	F	P	G	Y	H	A	F	F	G	R	M	S	D	Q	T	V	M	L	S	E	K	L	V	E	V	S	P	F	D	S	G	.	.	.	.	R	V	F	Y	T	N	S	G	S	E	A	N
Template Known Secondary structure				T	T					T		T	T		S			.	.														.	.							B	T	T	B																S	S		S	S		.	.	.	.						S	S
Template Predicted Secondary structure																		.	.														.	.																																.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.
		109	110	.	.	.	.	.	.	.	.							.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.																							.
Predicted Secondary structure												.	.	.	.	.	.																	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.																	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	G	A	D	F	L	K	R	Y	.	.	.	.	.	.	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	.	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R
Query Conservation												.	.	.	.	.	.																	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	T	M	V	K	M	L	W	F	L	H	A	A	E	G	K	P	Q	K	R	K	I	L	T	R	W	N	A	Y	H	G	V	T	A	V	S	A	S	M	T	G	K	P	Y	N	S	V	F	G	L	P	L	P	G	F	V	H	L	T	C	P	H	Y	W	R	Y	G	E	E	G	E	T	E	E	Q	F	V	A	R	L
Template Known Secondary structure															T	T		T	T								T	T					S	S							S			G	G	G	G	G	G	T		S		T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	.	.	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L
Query Conservation																														.	.
Alig confidence																														.	.																																																	.	.
Template Conservation																																																																																.	.
Template Sequence		A	R	E	L	E	E	T	I	Q	R	E	G	A	D	T	I	A	G	F	F	A	E	P	V	M	G	A	G	G	V	I	P	P	A	K	G	Y	F	Q	A	I	L	P	I	L	R	K	Y	D	I	P	V	I	S	D	E	V	I	C	G	F	G	R	T	G	N	T	W	G	C	V	T	Y	D	F	T	P	D	.	.
Template Known Secondary structure														G	G	G								S	S	B	S	T	T	T	S	B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	S	S					T	T				S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T
Query Conservation
Alig confidence		.	.	.	.																																																												.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																																												.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	A	I	I	S	S	K	N	L	T	A	G	F	F	P	M	G	A	V	I	L	G	P	E	L	S	K	R	L	E	T	A	I	E	A	I	E	E	F	P	H	G	F	T	A	S	G	H	P	V	G	C	A	I	A	L	K	A	I	D	.	.	.	.	.	.	.	.	V	V	M	N	E	G	L	A	E
Template Known Secondary structure		.	.	.	.						G	G	G	G	T	T	S	S																							T	S			T	T																			.	.	.	.	.	.	.	.					S	S
Template Predicted Secondary structure		.	.	.	.																																																												.	.	.	.	.	.	.	.
Template SS confidence
						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.									.	340	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.															.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.				.	.	.	.	.		.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.						.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.						.
Query Sequence		R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	G	R	M	C	V	.	A
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.						.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.						.
Template Conservation
Template Sequence		N	V	R	R	L	A	P	R	F	E	E	R	L	K	H	I	A	E	R	P	N	I	G	E	Y	R	G	I	G	F	M	W	A	L	E	A	V	K	D	K	A	S	K	T	P	F	D	G	N	L	S	V	S	E	R	I	A	N	T	C	T	D	L	G	L	I	C	R	P	L	G	Q	S	V	V	L	C	P	P	F
Template Known Secondary structure																		T	T	S	T	T								T	T								S	B	T	T	T	T	B				G	G	G													T	T							T	T								T
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	T	E	A	Q	M	D	E	M	F	D	K	L	E	K	A	L
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions