Job Description P04693 Confidence 99.73% Date Thu Jan 5 10:58:18 GMT 2012 Rank 228 Aligned Residues 306 % Identity 13% Template c3n75E_ PDB info PDB header:lyase Chain: E: PDB Molecule:lysine decarboxylase, inducible; PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci Resolution 2.00 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.																						.	.
Template Conservation																												.	.	.	.	.	.	.	.																						.	.
Template Sequence		S	E	L	G	S	L	L	D	H	S	G	P	H	K	E	A	E	Q	Y	I	A	R	V	F	N	A	.	.	.	.	.	.	.	.	D	R	S	Y	M	V	T	N	G	T	S	T	A	N	K	I	V	G	M	Y	S	.	.	A	P	A	G	S	T	I	L	I	D	R	N	C	H	K	S	L	T	H	L	M	M	M
Template Known Secondary structure		G	G	G		B	T	T	T	T	B	T														T		.	.	.	.	.	.	.	.	S						S	S														.	.			T	T							S	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210									.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.										.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.																		.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.																		.	.	.
Query Sequence		A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	.	.	.	.	.	.	.	.	.	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	.	.	.	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I
Query Conservation																				.	.	.	.	.	.	.	.	.																		.	.	.
Alig confidence																.				.	.	.	.	.	.	.	.	.																		.	.	.							.	.									.	.	.													.	.
Template Conservation																.																																							.	.									.	.	.													.	.
Template Sequence		S	D	V	T	P	I	Y	F	R	P	T	R	N	A	.	Y	G	I	L	G	G	I	P	Q	S	E	F	Q	H	A	T	I	A	K	R	V	K	E	T	P	N	A	T	W	P	V	H	A	V	I	T	N	S	.	.	T	Y	D	G	L	L	Y	N	.	.	.	T	D	F	I	K	K	T	L	D	V	K	S	.	.
Template Known Secondary structure		S													T	.	T								G	G	G	G	S											S	T	T			S		S						S	S	.	.		T	T						.	.	.											S		.	.
Template Predicted Secondary structure																.																																							.	.									.	.	.													.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.	.
		209	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		P	F	L	D	I	A	Y	Q	.	.	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S
Query Conservation										.	.
Alig confidence										.	.																																.	.	.																.
Template Conservation																																											.	.	.																.
Template Sequence		I	H	F	D	S	A	W	V	P	Y	T	N	F	S	P	I	Y	E	G	K	C	G	M	S	G	G	R	V	E	G	K	V	I	Y	E	T	Q	S	T	H	L	.	.	.	L	A	A	F	S	Q	A	S	M	I	H	V	K	G	D	.	V	N	E	E	T	F	N	E	A	Y	M	M	H	T	T	T	S	P	H	Y
Template Known Secondary structure							T	T		T	T	G	G	G	S	G	G	G	T	T	S	S	T	T	S	S				T	T												.	.	.		S			T	T								S		.														S		S	S
Template Predicted Secondary structure																																											.	.	.																.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.				.	.	370	.	.	.	.	.	.	.	.	.	380	.	.		.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.
Template Sequence		G	I	V	A	S	T	E	T	A	A	A	M	M	K	.	.	.	.	.	.	.	.	G	N	A	G	K	R	L	I	N	G	S	I	E	R	A	I	K	F	R	K	E	I	K	R	L	R	T	E	S	D	G	W	F	F	D	V	W	Q	P	D	H	I	D	T	T	E	C	W	P	L	R	S	D	S	T	W	H	G
Template Known Secondary structure															S	.	.	.	.	.	.	.	.																													S	S	S						S	S		S				S		S						T	T			T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.									.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
													335	.	.	.	.	340	.	.	.	.	.	.	.				.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370			.	.	.	.	.	.	.	.				.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.														.	.	.																								.	.									.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.														.	.	.																								.	.									.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	P	E	R	N	F	D	Y	L	L	N	Q	R	G	.	.	.	M	F	S	Y	T	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	.	.	I	A	S	G	R	M	C	V	.	.	.	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.														.	.	.																								.	.									.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.														.	.	.																								.	.									.	.	.
Template Conservation
Template Sequence		F	K	N	I	D	N	E	H	M	Y	L	D	P	I	K	V	T	L	L	T	P	G	M	E	K	D	G	T	M	S	D	F	G	I	P	A	S	I	V	A	K	Y	L	D	E	H	G	I	V	V	E	K	T	G	P	Y	N	L	L	F	L	F	S	I	G	I	D	K	T	K	A	L	S	L	L	R	A	L	T	D
Template Known Secondary structure			T	T			S	S	S					T	T							S	S	B		S	S	S		B		S	S														T	T				S				S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
		396
Predicted Secondary structure
Query SS confidence
Query Sequence		V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		556

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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