Job Description P04693 Confidence 99.86% Date Thu Jan 5 10:58:18 GMT 2012 Rank 199 Aligned Residues 328 % Identity 16% Template c3n0lA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni Resolution 1.80 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.
Query SS confidence																																											.	.	.	.	.
Query Sequence		I	L	T	L	M	E	R	F	K	E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	.	.	.	.	.	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D
Query Conservation																																											.	.	.	.	.
Alig confidence																.								.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation																.								.	.	.	.	.	.	.
Template Sequence		I	F	D	L	T	N	K	E	L	E	R	Q	C	E	.	G	L	E	X	I	A	S	.	.	.	.	.	.	.	E	N	F	T	L	P	E	V	X	E	V	X	G	S	I	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	F	V	D	E	I	E	T	L	A	I	E	R	C	K	K	L	F
Template Known Secondary structure																.	S					T	T	.	.	.	.	.	.	.													T	S	G	G	G	G							T	T			S	S	S
Template Predicted Secondary structure																.								.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30								.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L
Query Conservation
Alig confidence						.	.	.	.	.																				.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.																				.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	C	K	F	.	.	.	.	.	A	N	V	Q	P	N	S	G	S	Q	A	N	Q	G	V	Y	A	A	L	.	.	I	N	P	G	D	K	I	L	G	X	D	L	K	X	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	S	C	F	Y	G	V	E	L	D	G	R	I	D	Y	E	K	V	R	E	I	A
Template Known Secondary structure		T		S		.	.	.	.	.						S	S													.	.	S		T	T											S		.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S	S
Template Predicted Secondary structure						.	.	.	.	.																				.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120														.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K
Query Conservation
Alig confidence								.	.						.	.										.	.	.																																								.	.	.	.	.	.
Template Conservation								.	.						.	.										.	.	.																																								.	.	.	.	.	.
Template Sequence		K	K	E	K	P	K	.	.	L	I	V	C	G	.	.	A	S	A	Y	A	R	V	I	D	.	.	.	F	A	K	F	R	E	I	A	D	E	I	G	A	Y	L	F	A	D	I	A	H	I	A	G	L	V	V	A	G	E	H	P	S	P	F	P	Y	A	H	.	.	.	.	.	.	V	V	S	S	T	T	H	K
Template Known Secondary structure							S	.	.						.	.		S	S			S				.	.	.												T								T	T	T						T	T	S	S				T	T	T		S	.	.	.	.	.	.						S	S	T
Template Predicted Secondary structure								.	.						.	.										.	.	.																																								.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.			.	.	.	.	.			.	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.							.	.	.	220	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V
Query Conservation
Alig confidence					.	.												.	.	.	.	.	.																														.	.	.	.
Template Conservation					.	.												.	.	.	.	.	.																														.	.	.	.
Template Sequence		T	L	R	.	.	G	P	R	G	G	I	I	X	T	N	D	.	.	.	.	.	.	E	E	L	A	K	K	I	N	S	A	I	F	P	G	I	Q	G	G	P	L	X	H	V	I	A	A	K	A	V	.	.	.	.	G	F	K	F	N	L	S	D	E	W	K	V	Y	A	K	Q	V	R	T	N	A	Q	V	L	A
Template Known Secondary structure		T	T		.	.	S		S							S		.	.	.	.	.	.												T	T	T	T		S	S												.	.	.	.						T	S
Template Predicted Secondary structure					.	.												.	.	.	.	.	.																														.	.	.	.
Template SS confidence
		225	.	.			.	.	230	.	.	.	.	.	.	.	.							.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.					.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.							.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370															.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																											.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Query Sequence		K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	.	.	.	.	.	.	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	S	G	R	M	C	V	A	G	L	N	.	.	.	.	.
Query Conservation																											.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Alig confidence									.	.	.	.															.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		N	V	L	X	D	R	K	.	.	.	.	F	K	L	V	S	D	G	T	D	N	H	L	V	L	X	S	F	L	D	R	E	F	S	G	K	D	A	D	L	A	L	G	N	A	G	I	T	A	N	K	N	T	V	P	G	E	I	R	S	P	F	I	T	S	G	L	R	L	G	T	P	A	L	T	A	R	G	F	K
Template Known Secondary structure							T	T	.	.	.	.				G	G	G	S		S	S	S							T	T	S	S	S												T	T									T	T			S		T	T	T		S												T	T
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.					300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	E	X	E	I	V	S	N	Y	I	A	D	I	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions