Job Description P04693 Confidence 99.96% Date Thu Jan 5 10:58:18 GMT 2012 Rank 111 Aligned Residues 379 % Identity 10% Template c3mc6C_ PDB info PDB header:lyase Chain: C: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of scdpl1 Resolution 3.15 Å

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		2	.	.	.	.	.			.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		F	Q	K	V	D	A	.	.	Y	A	G	D	P	I	L	T	L	M	E	R	F	K	E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I
Query Conservation								.	.
Alig confidence								.	.																.	.
Template Conservation																									.	.
Template Sequence		F	P	Q	L	P	S	N	G	I	P	Q	D	D	V	I	E	E	L	N	K	L	N	D	.	.	L	I	P	H	T	Q	W	K	E	G	K	V	S	G	A	V	Y	H	G	G	D	D	L	I	H	L	Q	T	I	A	Y	E	K	Y	C	V	A	N	Q	L	H	P	D	V	F	P	A	V	R	K	M	E	S	E	V
Template Known Secondary structure			S	S			S	S																	.	.	S	S					G	G	G	T		B	S	S	S		S																	T	S	S		B	T	T		T	T	T
Template Predicted Secondary structure																									.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.							120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.
Query Sequence		A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	.	.	.	.	.	.	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E
Query Conservation																																										.	.	.	.	.	.
Alig confidence																					.	.																				.	.	.	.	.	.																																.
Template Conservation																					.	.																																																									.
Template Sequence		V	S	M	V	L	R	M	F	N	A	P	S	D	T	G	C	G	T	T	.	.	T	S	G	G	T	E	S	L	L	L	A	C	L	S	A	K	M	Y	A	L	H	H	R	G	I	T	E	P	E	I	I	A	P	V	T	A	H	A	G	F	D	K	A	A	Y	Y	F	G	M	K	L	R	H	V	E	L	.	D	P
Template Known Secondary structure									T	T			T	T	T						.	.		S	S																				S			S	S							T	T	S											S									B	.		T
Template Predicted Secondary structure																					.	.																																																									.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	.	.	G	M	E	E	D	A	Y	A	I	R	A
Query Conservation																																																																					.	.
Alig confidence																.	.	.																						.	.	.																											.	.
Template Conservation																.	.	.																						.	.	.
Template Sequence		T	T	Y	Q	V	D	L	G	K	V	K	K	F	I	.	.	.	N	K	N	T	V	L	L	V	G	S	A	P	N	F	P	H	G	I	A	D	D	.	.	.	I	E	G	L	G	K	I	A	Q	K	Y	K	L	P	L	H	V	D	S	C	L	G	S	F	I	V	S	F	M	E	K	A	G	Y	K	N	L	P	L
Template Known Secondary structure		T	T		S	B		T	T	T	T	G	G	G		.	.	.		S	S								T	T		T	T	T					S	.	.	.		T	T	T	T	T					T	T							T	T	T	T					G	G	G	T	T	T	T			S
Template Predicted Secondary structure																.	.	.																						.	.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.				.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.				.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280					.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	.	.	.	.	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S
Query Conservation																																																			.	.	.	.
Alig confidence																																																			.	.	.	.																								.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		L	D	F	R	V	P	G	V	T	S	I	S	C	D	T	H	K	Y	G	F	A	P	K	G	S	S	V	I	M	Y	R	N	S	D	L	R	M	H	Q	Y	Y	V	N	P	A	W	T	G	G	L	Y	G	S	P	T	L	A	G	S	R	P	G	A	I	V	V	G	C	W	A	T	M	V	N	M	G	.	.	.	.
Template Known Secondary structure			S	T	T	S	T	T								T	T	T	T	T				S	S							S	S					T	T	T	S			B	T	T		T	T	S		B			S	S	S		S	S		B																.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370						.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																																														.	.																				.	.	.	.	.
Query SS confidence																																														.	.																				.	.	.	.	.
Query Sequence		W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	.	.	T	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	.	.	.	.	.	I	A	S	G	R	M	C	V	A	G
Query Conservation																																														.	.																				.	.	.	.	.
Alig confidence		.																											.																	.	.																				.	.	.	.	.
Template Conservation		.																											.
Template Sequence		.	E	N	G	Y	I	E	S	C	Q	E	I	V	G	A	A	M	K	F	K	K	Y	I	Q	E	N	I	.	P	D	L	D	I	M	G	N	P	R	Y	S	V	I	S	F	S	S	K	T	L	N	I	H	E	L	S	D	R	L	S	K	K	G	W	H	F	N	A	L	Q	K	P	V	A	L	H	M	A	F	T	R
Template Known Secondary structure		.																									S		.	T	T					S				S	S							T	T	T	T										T	T	T		B						S	S									T
Template Predicted Secondary structure		.																											.
Template SS confidence
			440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.		.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	A	H	V	V	D	E	I	C	D	I	L	R	T	T	V
Template Known Secondary structure		T	T	T		T
Template Predicted Secondary structure
Template SS confidence
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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