Phyre 2 alignment of P04693 with c3ly1C

Job Description P04693
Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012

Rank 65 Aligned Residues 332

% Identity 20% Template c3ly1C_

PDB info PDB header:transferase Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	R	F	K	E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A
Query Conservation
Alig confidence																		.	.	.	.	.																					.	.	.					.																	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.																					.	.	.					.																	.	.	.	.	.	.
Template Sequence	A	A	F	T	A	P	S	T	D	N	P	I	R	I	N	F	N	.	.	.	.	.	E	N	P	L	G	X	S	P	K	A	Q	A	A	A	R	D	A	V	V	K	.	.	.	A	N	R	Y	.	A	K	N	E	I	L	X	L	G	N	K	L	A	A	H	H	.	.	.	.	.	.	Q	V	E	A	P	S	I	L
Template Known Secondary structure								S	S	S					S	S		.	.	.	.	.			S	S														G	G	G	.	.	.	T	T	S		.																T	.	.	.	.	.	.	T	S		G	G	G
Template Predicted Secondary structure																		.	.	.	.	.																					.	.	.					.																	.	.	.	.	.	.
Template SS confidence
	48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.						.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.							.	.	.	.	.	110	.	.

	98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L
Query Conservation
Alig confidence		.	.																.	.																																					.	.
Template Conservation		.	.																.	.																																					.	.
Template Sequence	L	.	.	T	A	G	S	S	E	G	I	R	A	A	I	E	A	Y	.	.	A	S	L	E	A	Q	L	V	I	P	E	L	T	Y	G	D	G	E	H	F	A	K	I	A	G	X	K	V	T	K	V	K	X	L	D	N	.	.	W	A	F	D	I	E	G	L	K	A	A	V	A	A	Y	S	G	P	S	I	V	Y
Template Known Secondary structure		.	.		S														.	.			T	T							S	S	S		T									T	T										T	T	.	.	S													T			S
Template Predicted Secondary structure		.	.																.	.																																					.	.
Template SS confidence
	113			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

	178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G
Query Conservation
Alig confidence					.																													.														.
Template Conservation					.																													.														.
Template Sequence	L	V	N	P	.	N	N	P	T	G	T	I	T	P	A	D	V	I	E	P	W	I	A	S	K	P	A	N	T	X	F	I	V	.	D	E	A	Y	A	E	F	V	N	D	P	R	F	.	R	S	I	S	P	X	I	T	Q	G	A	E	N	I	I	L	L	K	T	F	S	K	I	H	A	X	A	G	X	R	V	G
Template Known Secondary structure			S	S	.		T	T	T															T			T	T						.			T	T	G	G	G				T	T		.			S						T	T		S	S							S	S	S	T	T			G	G	G
Template Predicted Secondary structure					.																													.														.
Template SS confidence
	187	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

	258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.																													.
Template Conservation																	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.																													.
Template Sequence	Y	A	V	A	H	P	T	V	I	A	L	X	G	R	Y	V	.	.	.	.	.	.	.	.	.	A	G	E	K	I	N	F	S	G	V	D	A	A	L	A	S	X	N	D	.	.	.	.	.	.	.	S	A	F	I	T	Y	S	K	K	S	N	D	V	S	R	Q	I	L	L	K	A	L	E	D	L	K	L	P	.
Template Known Secondary structure														T	T	T	.	.	.	.	.	.	.	.	.	T	S	S																	.	.	.	.	.	.	.																										T			.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.																													.
Template SS confidence
	264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.										280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.								.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

	338	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.								.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure															.	.																							.	.	.	.	.	.	.
Query SS confidence															.	.																							.	.	.	.	.	.	.
Query Sequence	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	.	.	T	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	G	R	M	C	V	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V
Query Conservation															.	.																							.	.	.	.	.	.	.
Alig confidence	.	.	.	.											.	.																							.	.	.	.	.	.	.							.	.
Template Conservation	.	.	.	.																																																.	.
Template Sequence	.	.	.	.	Y	L	P	S	E	G	N	F	V	F	H	Q	L	V	V	P	L	K	D	Y	Q	T	H	X	A	D	A	G	V	L	I	G	R	A	F	P	P	A	D	N	W	C	R	I	S	L	G	.	.	T	P	Q	E	X	Q	W	V	A	D	T	X	R	E	F
Template Known Secondary structure	.	.	.	.	B					S	S							S	S												T	T								T	T		T	T								.	.
Template Predicted Secondary structure	.	.	.	.																																																.	.
Template SS confidence
					327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.			.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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