Job Description P04693 Confidence 99.91% Date Thu Jan 5 10:58:18 GMT 2012 Rank 161 Aligned Residues 328 % Identity 13% Template c3l44A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase 1; PDBTitle: crystal structure of bacillus anthracis heml-1, glutamate semialdehyde2 aminotransferase Resolution 2.05 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L
Query Conservation
Alig confidence																		.	.														.	.																							.	.	.	.	.	.	.	.	.
Template Conservation																		.	.														.	.																							.	.	.	.	.	.	.	.	.
Template Sequence		I	D	Y	L	A	A	Y	G	P	I	I	T	G	H	A	H	.	.	P	H	I	T	K	A	I	T	T	A	A	E	N	.	.	G	V	L	Y	G	T	P	T	A	L	E	V	K	F	A	K	X	L	K	E	A	X	.	.	.	.	.	.	.	.	.	P	A	L	D	K	V	R	F	V	N	S	G	T	E	A	V
Template Known Secondary structure						G	G	G	T	T		S	S		B	T		.	.														.	.		S			S	S																	.	.	.	.	.	.	.	.	.	T	T		S						S	S
Template Predicted Secondary structure																		.	.														.	.																							.	.	.	.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.										.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.														.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.
Template Sequence		X	T	T	I	R	V	A	R	A	Y	T	G	R	T	K	I	X	K	F	A	G	C	Y	H	G	H	S	D	L	V	L	V	A	L	G	T	P	D	S	A	G	V	P	Q	S	I	A	Q	E	V	I	T	V	P	.	.	.	.	.	.	.	F	N	N	V	E	T	L	K	E	A	L	D	K	W	G	H	E	V	A
Template Known Secondary structure																					T	T					S	S	G	G	G	G	B					B	S	S	T	T							T	T						.	.	.	.	.	.	.	T	T													G	G	G
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.								.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	.	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E
Query Conservation																	.
Alig confidence																	.																																.	.	.	.																							.	.	.	.	.
Template Conservation																																																	.	.	.	.																							.	.	.	.	.
Template Sequence		A	I	L	V	E	P	I	V	G	N	F	G	I	V	E	P	K	P	G	F	L	E	K	V	N	E	L	V	H	E	A	G	A	L	V	I	Y	D	E	V	I	T	A	F	R	F	X	.	.	.	.	Y	G	G	A	Q	D	L	L	G	V	T	P	D	L	T	A	L	G	V	I	G	G	.	.	.	.	.	G	L
Template Known Secondary structure							S	S	B		T	T	S		B				T	T											T	T	T								T	T	T	T	T	T	S	S	.	.	.	.	S	S							T				S							T	T	T	.	.	.	.	.	T	S
Template Predicted Secondary structure																																																	.	.	.	.																							.	.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.						.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M
Query Conservation
Alig confidence																		.	.	.	.																											.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.																											.	.	.	.	.	.	.	.
Template Sequence		P	I	G	A	Y	G	G	K	K	E	I	X	E	Q	V	A	.	.	.	.	P	L	G	P	A	Y	Q	A	G	T	X	A	G	N	P	A	S	X	A	S	G	I	A	C	L	E	.	.	.	.	.	.	.	.	V	L	Q	Q	E	G	L	Y	E	K	L	D	E	L	G	A	T	L	E	K	G	I	L	E	Q	A
Template Known Secondary structure		S												T	T	B	T	.	.	.	.	T	T	S	S	B					T	T	T	T														.	.	.	.	.	.	.	.			T	S	T	T
Template Predicted Secondary structure																		.	.	.	.																											.	.	.	.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.					.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.									.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.																		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.			.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.					.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.					.
Query Sequence		P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	S	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	G	.	.	R	M	C	V	.	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.					.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.					.
Template Conservation
Template Sequence		A	K	H	N	I	D	I	T	L	N	R	L	K	G	A	L	T	V	Y	F	T	T	N	T	I	E	D	Y	D	A	A	Q	D	T	D	G	E	X	F	G	K	F	F	K	L	X	L	Q	E	G	V	N	L	A	P	S	K	Y	E	A	W	F	L	T	T	E	H	T	K	E	D	I	E	Y	T	I	E	A	V	G
Template Known Secondary structure				T	T									T	T							S	S	S				S							S															T	T					S	S	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		395	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		425	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions