Job Description P04693 Confidence 99.89% Date Thu Jan 5 10:58:18 GMT 2012 Rank 185 Aligned Residues 312 % Identity 13% Template c3ke3A_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase; PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.											.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	.	.	.	.	.	.	.	.	.	.	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D
Query Conservation																	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.																					.	.	.
Template Conservation																																												.	.	.	.	.																					.	.	.
Template Sequence		D	P	N	G	L	L	E	Y	S	V	V	Y	T	D	R	A	L	N	H	X	S	K	A	F	Q	E	V	X	N	D	L	L	S	N	L	K	T	V	Y	N	A	E	.	.	.	.	.	A	A	V	I	I	P	G	S	G	T	Y	G	X	E	A	V	A	R	Q	L	.	.	.	T	I	D	E	D	C	L	I	I	R
Template Known Secondary structure		S	T	T	S						S	S			T	T	S			T	T	S																			T		S	.	.	.	.	.							S														.	.	.		T	T
Template Predicted Secondary structure																																												.	.	.	.	.																					.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80
		129	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150										.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure							.	.																		.	.	.	.	.	.	.	.	.
Query SS confidence							.	.																		.	.	.	.	.	.	.	.	.
Query Sequence		P	T	W	E	N	.	.	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	.	.	.	.	.	.	.	.	.	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A
Query Conservation							.	.																		.	.	.	.	.	.	.	.	.
Alig confidence							.	.																		.	.	.	.	.	.	.	.	.																															.	.
Template Conservation																																																																	.	.
Template Sequence		N	G	W	F	S	Y	R	W	T	Q	I	L	E	K	G	K	F	A	K	S	S	T	V	L	T	A	E	R	T	E	D	T	E	A	P	K	P	F	A	P	V	D	I	E	T	A	V	A	K	I	K	E	D	K	S	A	I	V	Y	A	P	H	V	.	.	E	T	S	S	G	I	I	L	S	E	E	Y	I	K	A
Template Known Secondary structure			S																S	S										S	S			S	S																				T		S						S		.	.		T	T	T	T
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.																					.	.																.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.																					.	.
Template Sequence		L	S	E	A	V	H	S	V	G	G	L	L	V	I	D	C	I	A	S	G	C	V	W	L	D	X	.	.	.	.	.	.	.	.	.	.	K	E	L	G	I	D	V	L	I	S	A	P	Q	G	W	S	S	T	P	C	.	.	A	G	L	V	X	L	S	A	A	A	I	K	K	V	E	S	T	E	S	N	C	F
Template Known Secondary structure									T	T								T	T		T	T						.	.	.	.	.	.	.	.	.	.				T		S											S				.	.																T				S		S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.																					.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.											.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
										271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																								.
Query SS confidence		.	.	.	.	.	.	.	.																																																																								.
Query Sequence		.	.	.	.	.	.	.	.	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	.
Query Conservation		.	.	.	.	.	.	.	.																																																																								.
Alig confidence		.	.	.	.	.	.	.	.																															.	.	.	.	.																																					.
Template Conservation																																								.	.	.	.	.
Template Sequence		S	L	D	L	K	Q	W	L	T	I	X	R	A	Y	E	N	G	G	H	A	Y	H	A	T	X	P	T	D	S	L	R	Q	F	R	D	A	I	L	.	.	.	.	.	E	A	K	E	I	G	F	D	I	L	R	D	A	Q	W	E	L	G	N	R	V	R	K	V	L	T	D	K	G	I	E	S	V	A	A	E	G
Template Known Secondary structure		T	T														T	T	S				S	S																.	.	.	.	.																												T	T			B	S	B		T	T
Template Predicted Secondary structure																																								.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.														.	.	.	.	.	.	380		.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.								.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.								.
Query Sequence		L	L	N	Q	R	G	M	F	S	Y	T	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	A	G	.	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.								.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation
Template Sequence		F	E	A	P	G	V	V	V	S	Y	T	E	R	D	D	X	H	K	G	S	A	F	A	E	A	G	L	Q	I	A	A	G	V	P	L	K	V	G	E	P	D	N	F	K	T	F	R	L	G	L	F	G	L	D	K	L	T	D	I	D	G	T	V	E	R	F	E	K	A	L
Template Known Secondary structure			B		S	S							S						S	S						T	T										S	S				T	T										S					T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions