Job Description P04693 Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012 Rank 29 Aligned Residues 361 % Identity 16% Template c3jtxB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution Resolution 1.91 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	Q	K	V	D	A	Y	A	G	D	P	I	L	T	L	M	E	R	F	K	E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A
Query Conservation
Alig confidence																																				.	.	.	.	.																					.	.	.
Template Conservation																																				.	.	.	.	.																					.	.	.
Template Sequence		L	L	K	Q	L	K	P	Y	P	F	A	R	L	H	E	A	X	Q	G	I	S	A	P	E	G	X	E	A	V	P	L	H	I	G	.	.	.	.	.	E	P	K	H	P	T	P	K	V	I	T	D	A	L	T	A	S	L	H	E	.	.	.	L	E	K	Y	P	L	T	A	G	L	P	E	L	R	Q	A	C	A
Template Known Secondary structure				T	T														T	T					T	T						T	T			.	.	.	.	.	S			S													T	G	G	G	.	.	.	G	G	S				T	T
Template Predicted Secondary structure																																				.	.	.	.	.																					.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		81	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure									.																																	.	.	.
Query SS confidence									.																																	.	.	.
Query Sequence		P	L	L	F	G	A	D	.	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	.	.	.	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N
Query Conservation									.																																	.	.	.
Alig confidence									.													.																.	.			.	.	.																																	.
Template Conservation																						.																.	.																																						.
Template Sequence		N	W	L	K	R	R	Y	D	G	L	T	V	D	A	D	N	E	I	L	P	.	V	L	G	S	R	E	A	L	F	S	F	V	Q	T	V	.	.	L	N	P	V	G	I	K	P	A	I	V	S	P	N	P	F	Y	Q	I	Y	E	G	A	T	L	L	G	G	G	E	I	H	F	A	N	C	P	.	A	P	S	F
Template Known Secondary structure								T	T	T					T	T	T	S				.		S	S													.	.															S												T	T										.	T	T	T
Template Predicted Secondary structure																						.																.	.																																						.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.				.	.
Predicted Secondary structure																																																																													.	.	.
Query SS confidence																																																																													.	.	.
Query Sequence		G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	.	.	.	I	A
Query Conservation																																																																													.	.	.
Alig confidence															.	.	.																																																												.	.	.
Template Conservation															.	.	.
Template Sequence		N	P	D	W	R	S	I	S	E	E	V	W	K	.	.	.	R	T	K	L	V	F	V	C	S	P	N	N	P	S	G	S	V	L	D	L	D	G	W	K	E	V	F	D	L	Q	D	K	Y	G	F	I	I	A	S	D	E	C	Y	S	E	I	Y	F	D	G	N	K	P	L	G	C	L	Q	A	A	A	Q	L	G
Template Known Secondary structure					G	G	G	S						T	.	.	.	T								S	S		T	T	T																												T	T	T	T			S	T	T													T	T
Template Predicted Secondary structure															.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E
Query Conservation
Alig confidence																.																											.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation																.																											.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Sequence		R	S	R	Q	K	L	L	X	F	T	S	L	S	R	.	S	N	V	P	G	L	R	S	G	F	V	A	G	D	A	E	L	L	K	N	F	L	L	Y	R	T	.	.	.	.	.	.	.	Y	H	G	S	A	X	S	I	P	V	Q	R	A	S	I	A	A	W	D	D	.	.	.	.	.	.	.	E	Q	H	V	I
Template Known Secondary structure					T	T										.		S		G	G	G																					.	.	.	.	.	.	.			T																		.	.	.	.	.	.	.
Template Predicted Secondary structure																.																											.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270								.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290								.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.					.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																																													.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	S	A	.	.	.	.	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																													.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.																.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.
Template Sequence		D	N	R	R	L	Y	Q	E	K	F	E	R	V	I	P	I	L	Q	Q	V	F	D	V	.	.	.	.	.	K	L	P	D	A	S	F	Y	I	W	L	K	V	P	D	G	D	D	L	A	F	A	R	N	L	W	Q	K	A	A	I	Q	V	L	P	G	R	F	L	A	R	D	T	E	Q	G	N	P	G	E	G	Y
Template Known Secondary structure																			T	T	T	S			.	.	.	.	.				S	S	S	S							T	T	S																				G	G	G	G	S			B	T	T	B		T	T	T	T
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.						320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	M	C	V	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		V	R	I	A	L	V	A	.	D	V	A	T	C	V	K	A	A	E	D	I	V	S	L	Y
Template Known Secondary structure								S	.
Template Predicted Secondary structure									.
Template SS confidence
		372	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions