Job Description P04693 Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012 Rank 17 Aligned Residues 365 % Identity 19% Template c3if2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution Resolution 2.50 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.											.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																.	.																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		G	D	P	I	L	T	L	M	E	R	F	K	E	D	.	.	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	.	.	.	.	.	.	.	.	.	.	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H
Query Conservation																.	.																																									.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.												.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.
Template Sequence		P	T	G	I	S	Q	L	X	D	D	L	G	D	A	L	K	S	D	Q	P	V	N	X	L	G	G	G	.	.	.	N	P	A	K	I	D	A	V	N	E	L	F	L	E	T	Y	K	A	L	G	N	D	N	D	T	G	K	A	N	S	S	A	I	I	S	X	A	N	Y	S	N	P	Q	G	D	S	A	F	I	D
Template Known Secondary structure																	T	S	S	S						S			.	.	.																							S		T	T		S										S				T	T
Template Predicted Secondary structure																													.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120									.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.							.	140	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Query Sequence		A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	.	.	.	.	.	.	.	.	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	.	.	.	.	.	.	A	G	A	G	F
Query Conservation																																													.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Alig confidence																							.	.																.	.				.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation																							.	.																.	.
Template Sequence		A	L	V	G	F	F	N	R	H	Y	D	W	N	L	T	S	E	N	I	A	L	.	.	T	N	G	S	Q	N	A	F	F	Y	L	F	N	L	F	.	.	G	G	A	F	V	N	E	K	S	V	D	K	S	I	L	L	P	L	T	P	E	Y	I	G	Y	S	D	V	H	V	E	G	Q	H	F	A	A	V	L	P
Template Known Secondary structure																	G	G	G				.	.		S	S													.	.	S																S	S	S	S			G	G	G	T	T			S	S	S
Template Predicted Secondary structure																							.	.																.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		E	V	S	T	Y	P	W	Y	D	E	A	T	.	.	.	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A
Query Conservation														.	.	.
Alig confidence														.	.	.
Template Conservation
Template Sequence		H	I	D	E	V	T	H	D	G	E	E	G	F	F	K	Y	R	V	D	F	E	A	L	E	N	L	P	A	L	K	E	G	R	I	G	A	I	C	C	S	R	P	T	N	P	T	G	N	V	L	T	D	E	E	X	A	H	L	A	E	I	A	K	R	Y	D	I	P	L	I	I	D	N	A	Y	G	X	P	F	P
Template Known Secondary structure									T	T																T						T	T									S	S		T	T	T																			T	T								T	T		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N
Query Conservation
Alig confidence											.	.	.	.															.																											.	.	.	.	.	.	.
Template Conservation											.	.	.	.															.																											.	.	.	.	.	.	.
Template Sequence		N	I	I	Y	S	D	A	H	L	.	.	.	.	N	W	D	N	N	T	I	L	C	F	S	L	S	K	.	I	G	L	P	G	X	R	T	G	I	I	V	A	D	A	K	V	I	E	A	V	S	A	X	N	A	.	.	.	.	.	.	.	V	V	N	L	A	P	T	R	F	G	A	A	I	A	T	P	L	V	A
Template Known Secondary structure				B		S					.	.	.	.				T	T							S	G	G	.	G	T		G	G	G																					.	.	.	.	.	.	.			T	S	S
Template Predicted Secondary structure											.	.	.	.															.																											.	.	.	.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.					.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.								.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.						.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.																				.	.
Query SS confidence																																																								.	.	.	.	.																				.	.
Query Sequence		D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	.	.	.	.	.	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.
Query Conservation																																																								.	.	.	.	.																				.	.
Alig confidence																	.	.	.																																					.	.	.	.	.																				.	.
Template Conservation																	.	.	.
Template Sequence		N	D	R	I	K	Q	L	S	D	N	E	I	K	P	F	.	.	.	Y	Q	K	Q	A	T	L	A	V	K	L	L	K	Q	A	L	G	D	Y	P	L	X	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	S	T	L	D	L	Y	E	R	L	K	A	K	G	T	L	I	V	P	S	E	Y
Template Known Secondary structure		T	S									T					.	.	.																S	S	S	S	S								B	S	S							T	T		S	S												T	T						G	G	G
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.				.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
																		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation																									.
Template Sequence		F	F	P	G	V	D	V	S	D	Y	Q	H	A	H	E	C	I	R	X	S	I	A	A	.	D	E	Q	T	L	I	D	G	I	K	V	I	G	E	V	V
Template Known Secondary structure		S		T	T	S			T	T		G	G	G	G	S						S		S	.
Template Predicted Secondary structure																									.
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.