Job Description P04693 Confidence 99.97% Date Thu Jan 5 10:58:18 GMT 2012 Rank 90 Aligned Residues 330 % Identity 12% Template c3hqtB_ PDB info PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa Resolution 2.70 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	.	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q
Query Conservation																																												.
Alig confidence																																												.																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		K	Q	A	S	P	D	D	I	I	L	Q	S	N	D	Y	L	A	L	A	N	H	P	L	I	K	A	R	L	A	K	S	L	L	E	E	Q	Q	S	L	F	M	S	A	S	F	L	Q	N	D	Y	D	K	P	M	I	E	K	R	L	A	K	F	T	G	F	D	.	.	.	.	.	.	.	.	.	.	E	C	L	L
Template Known Secondary structure		S				T	T	S								T	T			T	T														S							S	B	G	G	G	G		S	T	T	T	S												T		S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100											.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P
Query Conservation
Alig confidence																	.	.																																			.	.	.	.	.	.	.												.	.
Template Conservation																	.	.																																			.	.	.	.	.	.	.												.	.
Template Sequence		S	Q	S	G	W	N	A	N	V	G	L	L	Q	T	I	.	.	C	Q	P	N	T	N	V	Y	I	D	F	F	A	H	M	S	L	W	E	G	A	R	Y	A	N	A	Q	A	H	P	F	M	H	N	.	.	.	.	.	.	.	N	C	D	H	L	R	M	L	I	Q	R	.	.	H	G	P	G	I	I	V	V	D
Template Known Secondary structure			S														.	.			T	T							T	T	S											T	T								T	T	.	.	.	.	.	.	.												.	.			S
Template Predicted Secondary structure																	.	.																																			.	.	.	.	.	.	.												.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.								.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S
Query Conservation
Alig confidence													.	.	.																															.																													.	.	.
Template Conservation													.	.	.																															.																													.	.	.
Template Sequence		S	I	Y	S	T	L	G	T	I	A	P	.	.	.	L	A	E	L	V	N	I	S	K	E	F	G	C	A	L	L	V	D	E	S	H	S	L	G	T	H	G	P	N	G	.	A	G	L	L	A	E	L	G	L	T	R	E	V	H	F	M	T	A	S	L	A	K	T	F	A	Y	R	A	.	.	.	G	A	I	W
Template Known Secondary structure		S	B		T	T	T			B			.	.	.											T	T								T	T	T	B	T	T	B	S	G	G	G	.							T	T		G	G	G		S						S	S	S	T	T		S	S		.	.	.
Template Predicted Secondary structure													.	.	.																															.																													.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D
Query Conservation
Alig confidence																				.	.	.	.	.																			.	.	.	.	.	.	.																													.	.	.	.
Template Conservation																				.	.	.	.	.																			.	.	.	.	.	.	.																													.	.	.	.
Template Sequence		C	N	N	E	V	N	R	C	V	P	F	I	S	Y	P	A	I	F	.	.	.	.	.	S	S	T	L	L	P	Y	E	A	A	G	L	E	T	T	L	E	I	.	.	.	.	.	.	.	I	E	S	A	D	N	R	R	Q	H	L	D	R	M	A	R	K	L	R	I	G	L	S	Q	L	G	L	T	.	.	.	.
Template Known Secondary structure			S	S	S	G	G	G	T											.	.	.	.	.	S	B																	.	.	.	.	.	.	.				T																					T	T			.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.																			.	.	.	.	.	.	.																													.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.						.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.								.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		341	.	.	.	.	.	.	.	.	350	.	.	.	.					.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.												.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.						.
Query SS confidence																.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.						.
Query Sequence		Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	.	.	.	.	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	.	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation																.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.						.
Alig confidence		.	.													.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation		.	.
Template Sequence		.	.	I	R	S	E	S	Q	I	I	G	L	E	T	G	D	E	R	N	T	E	K	V	R	D	Y	L	E	S	N	G	V	F	G	S	V	F	C	R	P	A	T	S	K	N	K	N	I	I	R	L	S	L	N	S	D	V	N	D	E	Q	I	A	K	I	I	E	V	C	S	D	A	V
Template Known Secondary structure		.	.					S	S								S														T	T								T	T	S	S		T	T										T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions