Job Description P04693 Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012 Rank 70 Aligned Residues 347 % Identity 13% Template c3getA_ PDB info PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution Resolution 2.01 Å

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		3	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		Q	K	V	D	A	Y	A	G	.	D	P	I	L	T	L	M	E	R	F	K	E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P
Query Conservation										.
Alig confidence										.																									.	.	.	.	.																					.	.	.								.
Template Conservation																																			.	.	.	.	.																					.	.	.								.
Template Sequence		E	F	L	N	N	L	S	N	Y	E	P	G	K	D	I	E	V	I	A	K	E	Y	G	V	K	E	V	I	K	L	A	S	N	.	.	.	.	.	E	N	P	F	G	T	P	P	K	A	I	E	C	L	R	Q	N	A	N	K	.	.	.	A	H	L	Y	P	D	D	.	S	X	I	E	L	K	S	T	L	A	Q
Template Known Secondary structure		G	G	G	G	G	S																T	T		S						S	S		.	.	.	.	.			T	T		S												G	G	G	.	.	.	T	T	S				T	.	T
Template Predicted Secondary structure																																			.	.	.	.	.																					.	.	.								.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N
Query Conservation
Alig confidence				.	.	.	.	.	.										.	.																.	.																																					.	.	.	.	.
Template Conservation				.	.	.	.	.	.										.	.																.	.																																					.	.	.	.	.
Template Sequence		K	Y	.	.	.	.	.	.	K	V	Q	N	E	N	I	I	I	.	.	G	A	G	S	D	Q	V	I	E	F	A	I	H	S	K	.	.	L	N	S	K	N	A	F	L	Q	A	G	V	T	F	A	X	Y	E	I	Y	A	K	Q	C	G	A	K	C	Y	K	T	Q	S	I	T	H	.	.	.	.	.	N	L	D
Template Known Secondary structure				.	.	.	.	.	.	T			G	G	G				.	.		S	S													.	.			T	T							S	S			T										T							S	S	S	S		.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.										.	.																.	.																																					.	.	.	.	.
Template SS confidence
		76	.							.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.						.	.	140
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	.	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L
Query Conservation																																																															.
Alig confidence																																															.																.
Template Conservation																																															.
Template Sequence		E	F	K	K	L	Y	E	T	H	K	D	E	I	K	L	I	F	L	C	L	P	N	N	P	L	G	E	C	L	D	A	S	E	A	T	E	F	I	K	G	V	N	E	D	C	.	L	V	V	I	D	A	A	Y	N	E	F	A	S	F	K	D	S	K	K	H	L	E	P	C	E	L	I	K	E	F	D	N	V	L
Template Known Secondary structure										T	T	T	T								S	S		T	T	T															T	S		T	T	S	.							T	T									G	G	G												T	T
Template Predicted Secondary structure																																															.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L
Query Conservation
Alig confidence									.																										.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation									.																										.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Sequence		Y	L	G	T	F	S	L	.	Y	G	L	G	G	L	R	I	G	Y	G	I	A	N	A	N	I	I	S	A	F	Y	K	L	R	.	.	.	.	.	.	.	.	.	A	P	F	N	V	S	N	L	A	L	K	A	A	V	A	A	X	D	D	.	.	.	.	.	.	.	D	E	F	T	E	K	T	L	E	N	N	F
Template Known Secondary structure									.		S		T	T	T																			S	.	.	.	.	.	.	.	.	.		T	T		S													T		.	.	.	.	.	.	.
Template Predicted Secondary structure									.																										.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.										.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270								.	.	.	.	.	.	.	.	.	280	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.								.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																		.	.																						.	.	.	.	.	.	.
Query SS confidence																																		.	.																						.	.	.	.	.	.	.
Query Sequence		A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	.	.	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	G	R	M	C	V	A	G	L	N	T	A	N	V	Q	R	V	A	K
Query Conservation																																		.	.																						.	.	.	.	.	.	.
Alig confidence																.	.	.	.															.	.																						.	.	.	.	.	.	.							.	.
Template Conservation																.	.	.	.																																																			.	.
Template Sequence		S	Q	X	E	L	Y	K	E	F	A	K	K	H	N	.	.	.	.	I	K	I	I	D	S	Y	T	N	F	I	T	Y	F	F	D	E	K	N	S	T	D	L	S	E	K	L	L	K	K	G	I	I	I	R	N	L	K	S	Y	G	L	N	A	I	R	I	T	I	G	.	.	T	S	Y	E	N	E	K	F	F	T
Template Known Secondary structure														T	T	.	.	.	.							S	S	S							S	S	S											T	T	T							G	G	G	T		S								.	.
Template Predicted Secondary structure																.	.	.	.																																																			.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.					.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.	.
		392	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	F	D	K	I	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions