Job Description P04693 Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012 Rank 79 Aligned Residues 308 % Identity 16% Template c3fkdC_ PDB info PDB header:lyase Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase; PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis Resolution 2.50 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A
Query Conservation
Alig confidence										.	.	.	.	.	.																			.	.	.										.												.	.	.	.	.	.										.	.
Template Conservation										.	.	.	.	.	.																			.	.	.										.												.	.	.	.	.	.										.	.
Template Sequence		I	V	N	F	S	T	T	V	.	.	.	.	.	.	W	T	D	G	D	D	H	L	E	K	H	L	V	E	N	L	N	C	.	.	.	I	R	H	Y	P	E	P	D	A	.	G	T	L	R	Q	X	L	A	K	R	N	.	.	.	.	.	.	S	V	D	N	N	A	I	L	V	.	.	T	N	G	P	T	A	A
Template Known Secondary structure						S			S	.	.	.	.	.	.															T	G	G	G	.	.	.	G	G	S				T	T		.											T	.	.	.	.	.	.	T			G	G	G				.	.		S
Template Predicted Secondary structure										.	.	.	.	.	.																			.	.	.										.												.	.	.	.	.	.										.	.
Template SS confidence
		17	.	.	20	.	.	.	.							.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.							.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G
Query Conservation
Alig confidence										.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	Y	Q	I	A	Q	A	F	.	.	.	.	R	G	S	R	S	L	I	A	I	P	S	F	A	E	Y	E	D	A	C	R	X	Y	E	H	E	V	C	F	Y	P	S	N	E	D	I	G	E	A	D	F	.	.	.	.	.	.	.	.	.	.	.	.	S	N	X	D	F	C	W	L	C	N	P	N	N	P	D	G
Template Known Secondary structure									T	.	.	.	.	T	T								S												T	T								T	T	S		G	G	G	S			.	.	.	.	.	.	.	.	.	.	.	.	T	T		S						S	S		T	T	T
Template Predicted Secondary structure										.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.													.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E
Query Conservation
Alig confidence													.	.																														.	.	.	.
Template Conservation													.	.																														.	.	.	.
Template Sequence		R	L	L	Q	R	T	E	I	L	R	L	.	.	L	N	D	H	P	D	T	T	F	V	L	D	Q	S	Y	V	S	F	T	T	E	E	V	I	R	P	A	D	I	.	.	.	.	K	G	R	K	N	L	V	X	V	Y	S	F	S	H	A	Y	G	I	P	G	L	R	I	G	Y	I	V	A	N	K	D	F	X	K
Template Known Secondary structure													.	.					T	T	S							T	T	G	G	G		S	S					G	G	G	G	.	.	.	.	T	T		S	S							S	T	T	T	S	S		G	G	G
Template Predicted Secondary structure													.	.																														.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.																											.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.																											.	.	.	.
Template Sequence		R	V	A	A	F	S	.	.	.	.	.	.	.	.	.	T	P	W	A	V	N	A	L	A	I	E	A	A	K	F	I	L	I	H	.	.	.	.	.	.	.	P	A	Q	F	T	L	P	I	R	K	W	Q	R	N	T	V	D	F	I	T	A	L	N	R	L	D	.	.	.	.	G	V	E	V	H	P	S	G	T
Template Known Secondary structure					T	T		.	.	.	.	.	.	.	.	.		T	T		S															.	.	.	.	.	.	.																									S	T	.	.	.	.	T							S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.																											.	.	.	.
Template SS confidence
		218	.	220	.	.	.										.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.								.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.					.	270	.	.	.	.	.	.	.
		348	.	350	.	.	.	.	.	.					.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.											.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		M	F	S	Y	T	G	L	S	A	.	.	.	.	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation											.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.																		.	.	.	.	.	.	.	.	.	.							.	.
Template Conservation																																																.	.
Template Sequence		T	F	F	L	L	R	L	K	K	G	T	A	A	E	L	K	K	Y	X	L	E	E	Y	N	X	L	I	R	D	A	S	N	F	R	G	L	D	E	S	Y	V	R	I	T	T	Q	.	.	R	P	A	Q	N	Q	L	F	I	K	A	L	E	T	F	L
Template Known Secondary structure		S							S	S	S												T	T								T	T	S	T	T			T	T								.	.
Template Predicted Secondary structure																																																.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions