Phyre 2 alignment of P04693 with c3ezsB

Job Description P04693
Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012

Rank 37 Aligned Residues 353

% Identity 17% Template c3ezsB_

PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution

Resolution 2.19 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	V	D	A	Y	A	G	D	P	I	L	T	L	M	E	R	F	K	E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L
Query Conservation
Alig confidence																.	.															.	.	.	.	.																					.	.	.
Template Conservation																.	.															.	.	.	.	.																					.	.	.
Template Sequence	T	F	E	P	Y	P	F	E	R	L	R	A	L	L	K	.	.	E	I	T	P	K	K	R	G	L	D	L	G	I	G	.	.	.	.	.	E	P	Q	F	E	T	P	K	F	I	Q	D	A	L	K	N	H	T	H	S	.	.	.	L	N	I	Y	P	K	S	A	F	E	E	S	L	R	A	A	Q	R	G	F	F
Template Known Secondary structure															T	.	.	T				S	S				B					.	.	.	.	.	S			S												T	T	G	G	G	.	.	.	G	G	S				T	T
Template Predicted Secondary structure																.	.															.	.	.	.	.																					.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30						.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.

	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence	K	R	R	F	K	I	E	L	K	E	N	E	L	I	S	.	.	T	L	G	S	R	E	V	L	F	N	F	P	S	F	V	L	F	D	Y	Q	N	P	T	I	A	Y	P	N	P	F	Y	Q	I	Y	E	G	A	A	K	F	I	K	A	K	S	L	L	X	P	L	T	K	E	N	D	F	T	P	S	L	N	E	K
Template Known Secondary structure					S					G	G	G				.	.		S	S	S												T	T	T		S	S								S			T									T	T										G	G	G	T	T
Template Predicted Secondary structure																.	.
Template SS confidence
	72	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.

	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	.	.	.	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L
Query Conservation																																																															.	.	.
Alig confidence			.	.	.	.	.	.																																																							.	.	.
Template Conservation			.	.	.	.	.	.
Template Sequence	E	L	.	.	.	.	.	.	Q	E	V	D	L	V	I	L	N	S	P	N	N	P	T	G	R	T	L	S	L	E	E	L	I	S	W	V	K	L	A	L	K	H	D	F	I	L	I	N	D	E	C	Y	S	E	I	Y	E	N	T	P	P	P	S	L	L	E	A	C	X	L	A	G	N	E	A	F	K	N	V	L
Template Known Secondary structure			.	.	.	.	.	.				S						S	S		T	T	T																			T	T								T	T	T	T		B	S	S	S												T	T		T	T		T	T
Template Predicted Secondary structure			.	.	.	.	.	.
Template SS confidence
	150	.							.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Sequence	V	I	H	S	L	S	K	R	S	S	A	P	G	L	R	S	G	F	I	A	G	D	S	R	L	L	E	K	Y	K	A	F	R	A	.	.	.	.	.	.	.	Y	L	G	Y	T	S	A	N	A	I	Q	K	A	S	E	A	A	W	L	D	.	.	.	.	.	.	.	D	R	H	A	E	F	F	R	N	I	Y	A
Template Known Secondary structure					S					T		G	G	G																					.	.	.	.	.	.	.																					.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template SS confidence
	224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.								.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.								.	.	280	.	.	.	.	.	.	.	.	.

	321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.													.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																				.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	S	.	.	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	G	.	.	.	.	.	.	.	.	.	.	.	.	R	M	C	V	A	G	L	N	T	A	N	V
Query Conservation																																				.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.																.	.																				.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation													.	.	.	.	.	.	.	.																																																						.
Template Sequence	N	N	L	K	L	A	R	K	I	F	K	N	.	.	.	.	.	.	.	.	T	L	I	Y	P	Y	S	F	Y	V	Y	L	P	V	Q	N	G	E	N	F	A	K	T	L	Y	Q	N	E	G	I	I	T	L	P	A	L	Y	L	G	R	N	R	I	G	A	D	Y	V	R	L	A	L	V	.	Y	D	T	P	L	L
Template Known Secondary structure										S	T	T	.	.	.	.	.	.	.	.					S	B	S	S							S																B				G	G	G	G		S	T	T	T	T	T	T								.	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																																																						.
Template SS confidence
	290	.	.	.	.	.	.	.	.	.	300	.									.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360

	387	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence	E	K	P	L	E	I	I	E	T	Y	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	361	.	.	.	.	.	.	.	.	370	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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