Job Description P04693 Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012 Rank 41 Aligned Residues 361 % Identity 17% Template c3eibB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana Resolution 1.85 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		I	L	T	L	M	E	R	F	K	E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	.	.	.	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P
Query Conservation																																																							.	.	.
Alig confidence																								.	.	.	.	.																											.	.	.																					.	.
Template Conservation																								.	.	.	.	.																																																		.	.
Template Sequence		A	R	R	R	S	A	H	L	L	K	Y	P	D	A	Q	V	I	S	L	G	I	G	.	.	.	.	.	D	T	T	E	P	I	P	E	V	I	T	S	A	M	A	K	K	A	H	E	L	S	T	I	E	G	Y	S	G	Y	G	A	E	Q	G	A	K	P	L	R	A	A	I	A	K	T	F	Y	G	.	.	G	L
Template Known Secondary structure												S	T	T							S	S		.	.	.	.	.				S																	T	T	S	T	T	T				S			T	T															T	.	.	T	T
Template Predicted Secondary structure																								.	.	.	.	.																																																		.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.						.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	.	.	.	.	G	V	R	F	N	D	L	L	A
Query Conservation																																																																					.	.	.	.
Alig confidence											.	.													.			.	.																																								.	.	.	.
Template Conservation											.	.													.			.	.
Template Sequence		G	I	G	D	D	D	V	F	V	.	.	S	D	G	A	K	C	D	I	S	R	L	Q	.	V	M	.	.	F	G	S	N	V	T	I	A	V	Q	D	P	S	Y	P	A	Y	V	D	S	S	V	I	M	G	Q	T	G	Q	F	N	T	D	V	Q	K	Y	G	N	I	E	Y	M	R	C	T	P	E	N	G	F	F
Template Known Secondary structure		T			G	G	G				.	.		S											.			.	.			T	T								S			T									T	T		S					T	T	T	T			T	T								T	T	T	T	T
Template Predicted Secondary structure											.	.													.			.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.		.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F
Query Conservation
Alig confidence																																																												.	.
Template Conservation																																																												.	.
Template Sequence		P	D	L	S	T	V	G	R	T	D	I	I	F	F	C	S	P	N	N	P	T	G	A	A	A	T	R	E	Q	L	T	Q	L	V	E	F	A	K	K	N	G	S	I	I	V	Y	D	S	A	Y	A	M	Y	M	S	D	D	N	.	.	P	R	S	I	F	E	I	P	G	A	E	E	V	A	M	E	T	A	S	F
Template Known Secondary structure				G	G	G					S						S	S		T	T	T																				T								T	T	G	G	G			S	S		.	.		S	S	G	G	G	S	T	T	G	G	G	T							S
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	.	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q
Query Conservation																												.
Alig confidence																												.																														.	.	.	.	.
Template Conservation																																																										.	.	.	.	.
Template Sequence		S	N	Y	A	G	F	T	G	V	R	L	G	W	T	V	I	P	K	K	L	L	Y	S	D	G	F	P	V	A	K	D	F	N	R	I	I	C	T	C	F	N	G	A	S	N	I	S	Q	A	G	A	L	A	C	L	T	.	.	.	.	.	P	E	G	L	E	A	M	H	K	V	I	G	F	Y	K	E	N	T	N
Template Known Secondary structure						S	T	T	T	T									T	T		B		T	T	S		B																S												S	S	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.						.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.					.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.											.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																																		.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	S	A	.	.	.	.	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	A	G	L	N	T	A	N	V	Q	R	V	A
Query Conservation																																		.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.																			.	.	.	.																		.	.	.	.	.	.	.	.	.	.								.
Template Conservation												.	.	.	.																																																									.
Template Sequence		I	I	I	D	T	F	T	S	L	G	.	.	.	.	Y	D	V	Y	G	G	K	N	A	P	Y	V	W	V	H	F	P	N	Q	S	S	W	D	V	F	A	E	I	L	E	K	T	H	V	V	T	T	P	G	S	G	F	G	P	G	G	E	G	F	V	R	V	S	A	F	G	.	H	R	E	N	I	L	E	A	C
Template Known Secondary structure										T	T	.	.	.	.							S	S	S	S							T	T	S																				G	G	G	G		G	G	G	T	T								S	.
Template Predicted Secondary structure												.	.	.	.																																																									.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.					.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.		410	.	.	.	.	.	.	.	.
		391	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	F	K	Q	L	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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