Job Description P04693 Confidence 99.89% Date Thu Jan 5 10:58:18 GMT 2012 Rank 182 Aligned Residues 299 % Identity 19% Template c3ecdC_ PDB info PDB header:transferase Chain: C: PDB Molecule:serine hydroxymethyltransferase 2; PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei Resolution 1.60 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L
Query Conservation
Alig confidence								.	.	.	.	.	.	.														.	.	.	.	.									.	.																					.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.														.	.	.	.	.									.	.																					.	.	.	.	.
Template Sequence		V	E	L	I	A	S	.	.	.	.	.	.	.	E	N	I	V	S	R	A	V	L	D	A	Q	G	.	.	.	.	.	S	V	L	T	N	K	Y	A	.	.	E	G	Y	D	E	V	E	A	L	A	I	E	R	V	K	R	L	F	N	A	.	.	.	.	.	G	H	A	N	V	Q	P	H	S	G	A	Q	A	N
Template Known Secondary structure						T	T	.	.	.	.	.	.	.													T	.	.	.	.	.	S	G	G	G	S	S		T	.	.	T																	T	T		.	.	.	.	.	S							S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.														.	.	.	.	.									.	.																					.	.	.	.	.
Template SS confidence
		34	.	.	.	.	.								40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80						.	.	.	.	.	.	.	.	.	90	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A
Query Conservation
Alig confidence									.	.															.	.	.	.	.	.	.	.	.	.	.	.	.							.																							.	.						.	.
Template Conservation									.	.															.	.	.	.	.	.	.	.	.	.	.	.	.							.																							.	.						.	.
Template Sequence		G	A	V	M	L	A	L	.	.	A	K	P	G	D	T	V	L	G	M	S	L	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	Q	Y	G	V	.	S	R	D	T	M	L	I	D	Y	D	Q	V	E	A	L	A	Q	Q	H	K	P	S	.	.	L	I	I	A	G	.	.	F	S	A	Y	P	R
Template Known Secondary structure									.	.			T	T											.	.	.	.	.	.	.	.	.	.	.	.	.						B	.		T	T	T		S	B															S	.	.						.	.		S			S	S
Template Predicted Secondary structure									.	.															.	.	.	.	.	.	.	.	.	.	.	.	.							.																							.	.						.	.
Template SS confidence
		107	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.														.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160			.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A
Query Conservation
Alig confidence					.	.	.																																								.	.	.	.	.	.											.	.
Template Conservation					.	.	.																																								.	.	.	.	.	.											.	.
Template Sequence		K	L	D	.	.	.	F	A	R	F	R	A	I	A	D	S	V	G	A	K	L	M	V	D	M	A	H	I	A	G	V	I	A	A	G	R	H	A	N	P	V	E	H	A	H	.	.	.	.	.	.	V	V	T	S	T	T	H	K	T	L	.	.	R	G	P	R	G	G	F	V	L	T	N	D	E	E	I	A	K
Template Known Secondary structure					.	.	.											T	T								T	T	T						T	T	S	S			G	G	G	T		S	.	.	.	.	.	.						S	S	G	G	G	.	.		S		S							S
Template Predicted Secondary structure					.	.	.																																								.	.	.	.	.	.											.	.
Template SS confidence
		185	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.							.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.																											.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.																											.	.	.	.
Template Sequence		K	I	N	S	A	.	.	.	.	.	.	.	.	.	V	G	P	L	M	H	V	I	A	G	K	A	V	A	F	G	E	A	L	.	.	.	.	.	.	.	T	D	D	F	K	T	Y	I	D	R	V	L	A	N	A	Q	A	L	G	D	V	L	K	A	G	G	.	.	.	.	V	D	L	V	T	G	G	T	D	N
Template Known Secondary structure							.	.	.	.	.	.	.	.	.																			T	.	.	.	.	.	.	.	S																								T	T	.	.	.	.				G	G	G	S		S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.																											.	.	.	.
Template SS confidence
		254	.	.	.	.										.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.								.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.					.	.	.	.	.	.	310	.	.	.
		349	350	.	.							.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370															.	.	.	.	.	.	.	.	.						380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Query SS confidence						.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Query Sequence		F	S	Y	T	.	.	.	.	.	.	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	S	G	R	M	C	V	A	.	.	.	.	.	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation						.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Alig confidence						.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Conservation
Template Sequence		H	L	L	L	V	D	L	R	P	K	G	L	K	G	A	Q	V	E	Q	A	L	E	R	A	G	I	T	C	N	K	N	G	I	P	F	D	P	E	K	P	T	I	T	S	G	I	R	L	G	T	P	A	G	T	T	R	G	F	G	A	A	E	F	R	E	V	G	R	L	I	L	E	V	F
Template Known Secondary structure		S							G	G	G	T													T	T									T	T		S	S		T	T	T		S												T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions