Job Description P04693 Confidence 99.86% Date Thu Jan 5 10:58:18 GMT 2012 Rank 198 Aligned Residues 275 % Identity 17% Template c3e6gA_ PDB info PDB header:lyase Chain: A: PDB Molecule:cystathionine gamma-lyase-like protein; PDBTitle: crystal structure of xometc, a cystathionine c-lyase-like2 protein from xanthomonas oryzae pv.oryzae Resolution 2.80 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Sequence		A	Y	E	R	C	V	A	A	L	E	G	G	T	.	.	.	.	.	.	.	.	.	.	R	A	F	A	F	A	S	G	M	A	A	T	S	T	V	M	.	.	.	E	L	L	D	A	G	S	H	V	V	A	M	D	D	L	Y	G	G	T	F	R	L	F	E	R	V	R	R	R	T	A	G	L	D	F	S	F	V
Template Known Secondary structure												T		S	.	.	.	.	.	.	.	.	.	.						S	S										.	.	.	T	T	S		T	T							S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80											.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A
Query Conservation
Alig confidence		.	.															.	.	.																				.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.															.	.	.																				.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	D	L	T	D	P	A	A	F	K	A	A	I	R	A	.	.	.	D	T	K	M	V	W	I	E	T	P	T	N	P	M	L	K	L	V	D	.	.	.	I	A	A	I	A	V	I	A	R	K	H	G	L	L	T	V	V	D	N	T	F	A	S	P	M	L	Q	R	.	.	.	.	.	.	.	.	.	.	P
Template Known Secondary structure		.	.		T	T											T	.	.	.	T								S	S		T	T	T						.	.	.											T	T								S	S	S		T	T	T			.	.	.	.	.	.	.	.	.	.	G
Template Predicted Secondary structure		.	.															.	.	.																				.	.	.																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
				135	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.											.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E
Query Conservation
Alig confidence																																																.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	L	G	A	D	L	V	V	H	S	A	T	K	Y	L	N	G	H	S	D	M	V	G	G	I	A	V	V	G	D	N	A	E	L	A	E	Q	M	A	F	L	Q	N	S	I	.	.	.	.	G	G	V	Q	G	P	F	D	S	F	L	A	L	R	G	L	K	T	.	.	.	.	.	.	.	.	.	.	L	P
Template Known Secondary structure		G	G	G	T		S						T	T	T	T	T	T		S	S	S										S																.	.	.	.			B														T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260											.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.																.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																					.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																					.	.	.	.	.	.
Query Sequence		E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	N	Q	R	G	M	F	S	Y	.	T	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	.	.	.	.	.	.
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																					.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																					.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	M	R	A	H	C	E	N	A	L	A	L	A	Q	W	L	E	T	H	P	A	I	E	K	V	I	Y	P	G	L	A	S	H	P	Q	H	V	L	A	K	R	Q	M	S	G	F	G	G	I	V	S	I	V	L	K	G	G	F	D	A	A	K	R	F	C	E	K	T	E	L	F	T	L	A	E	S	L	G	G
Template Known Secondary structure																				T		T	T							T	T	S	T	T	S	T	T									S	S			S							T	T													S	S	S				S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
																														372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	G	R	M	C	V	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.			.	.
Template Conservation																																					.			.	.
Template Sequence		V	E	S	L	V	N	H	P	A	V	M	T	H	A	S	I	P	V	A	R	R	E	Q	L	G	I	S	D	A	L	V	R	L	S	V	.	G	I	.	.	E	D	L	G	D	L	R	G	D	L	E	R	A
Template Known Secondary structure		S	S						T	T	T	T	T	T		S	S			T	T	T	T	T	S	S			S	S							.		S	.	.	S										T	T
Template Predicted Secondary structure																																					.			.	.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.			380	.	.	.	.	.	.	.	.	.	390	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions