Job Description P04693 Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012 Rank 34 Aligned Residues 344 % Identity 16% Template c3dzzB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution Resolution 1.61 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G
Query Conservation
Alig confidence													.	.	.	.	.																					.	.								.	.																													.	.
Template Conservation													.	.	.	.	.																					.	.								.	.																													.	.
Template Sequence		L	K	E	K	E	L	P	X	W	I	A	.	.	.	.	.	E	X	D	F	K	I	A	P	E	I	X	A	S	X	E	E	K	L	K	V	.	.	A	A	F	G	Y	E	S	.	.	V	P	A	E	Y	Y	K	A	V	A	D	W	E	E	I	E	H	R	A	R	P	K	E	D	W	C	V	F	.	.	A	S	G
Template Known Secondary structure				T	T						S	S	.	.	.	.	.			S	S															T	T	.	.								.	.																		S					G	G	G				.	.		S
Template Predicted Secondary structure													.	.	.	.	.																					.	.								.	.																													.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	.	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C
Query Conservation																																																						.
Alig confidence														.	.																																							.															.	.
Template Conservation														.	.																																																						.	.
Template Sequence		V	V	P	A	I	S	A	X	V	R	Q	F	.	.	T	S	P	G	D	Q	I	L	V	Q	E	P	V	Y	N	X	F	Y	S	V	I	E	G	N	G	R	R	V	I	S	S	D	L	I	Y	E	N	S	K	Y	S	V	N	W	A	D	L	E	E	K	L	A	T	.	.	P	S	V	R	X	X	V	F	C	N	P
Template Known Secondary structure														.	.	S		T	T							S	S			T								T	T	T												T	T														T	S	.	.	T	T								S	S
Template Predicted Secondary structure														.	.																																																						.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M
Query Conservation
Alig confidence																																												.
Template Conservation																																												.
Template Sequence		H	N	P	I	G	Y	A	W	S	E	E	E	V	K	R	I	A	E	L	C	A	K	H	Q	V	L	L	I	S	D	E	I	H	G	D	L	V	L	T	D	E	D	.	I	T	P	A	F	T	V	D	W	D	A	K	N	W	V	V	S	L	I	S	P	S	T	F	N	L	A	A	L	H	A	A	C	A	I	I	P
Template Known Secondary structure		B	T	T	T	T	B																	T	T								T	T	G	G	G	B		S	S			.				G	G	G	S		T	T	G	G	G	G											S		G	G	G
Template Predicted Secondary structure																																												.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L
Query Conservation
Alig confidence																.	.	.	.	.																			.	.	.	.	.	.																																.	.
Template Conservation																.	.	.	.	.																			.	.	.	.	.	.																																.	.
Template Sequence		N	P	D	L	R	A	R	A	E	E	S	F	F	L	.	.	.	.	.	A	G	I	G	E	P	N	L	L	A	I	P	A	A	I	A	A	Y	.	.	.	.	.	.	E	E	G	H	D	W	L	R	E	L	K	Q	V	L	R	D	N	F	A	Y	A	R	E	F	L	A	K	E	V	P	E	.	.	V	K	V	L
Template Known Secondary structure		S														.	.	.	.	.		T		S	S			T	T										.	.	.	.	.	.																														T	T	.	.	S
Template Predicted Secondary structure																.	.	.	.	.																			.	.	.	.	.	.																																.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.						.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280							.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.							.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.											.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	Q	R	G	M	F	S	Y	T	G	L	S	A	.	.	.	.	.	.	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation																.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.							.
Template Conservation																																																							.
Template Sequence		D	S	N	A	S	Y	L	A	W	V	D	I	S	A	L	G	X	N	A	E	D	F	C	K	Y	L	R	E	K	T	G	L	I	I	S	A	G	N	G	Y	R	G	N	G	H	E	F	V	R	I	N	L	A	.	C	P	K	E	L	V	I	D	G	X	Q	R	L	K	Q	G	V
Template Known Secondary structure				S	B	S	S							G	G	G		S																				G	G	G	G		T	T	G	G	G								.	S
Template Predicted Secondary structure																																																							.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions