Phyre 2 alignment of P04693 with c3dodA

Job Description P04693
Confidence 99.90% Date Thu Jan 5 10:58:18 GMT 2012

Rank 167 Aligned Residues 339

% Identity 12% Template c3dodA_

PDB info PDB header:transferase Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 bacillus subtilis

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L
Query Conservation
Alig confidence																		.																																					.	.	.	.	.	.	.	.
Template Conservation																		.																																					.	.	.	.	.	.	.	.
Template Sequence	Y	D	G	F	S	S	V	W	L	N	V	H	G	H	R	K	K	.	E	L	D	D	A	I	K	K	Q	L	G	K	I	A	H	S	T	L	L	G	M	T	N	V	P	A	T	Q	L	A	E	T	L	I	D	I	.	.	.	.	.	.	.	.	S	P	K	K	L	T	R	V	F	Y	S	D	S	G	A	E	A	M
Template Known Secondary structure			T	T					T		S	S		B	S			.											T	T		S					S	S	S																.	.	.	.	.	.	.	.	S		T	T								S	S
Template Predicted Secondary structure																		.																																					.	.	.	.	.	.	.	.
Template SS confidence
	47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.									100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.

	109	110	.	.	.	.	.	.	.	.	.							120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.
Query Sequence	K	V	G	A	D	F	L	K	R	Y	F	.	.	.	.	.	.	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C
Query Conservation												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																															.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.
Template Sequence	E	I	A	L	K	M	A	F	Q	Y	W	K	N	I	G	K	P	E	K	Q	K	F	I	A	M	K	S	Y	K	A	P	I	P	Y	V	Y	R	S	E	S	G	D	P	D	E	C	R	.	.	.	.	.	.	.	D	Q	C	L	R	E	L	A	Q	L	L	E	E	H	H	E	E	I	A	A	L	S	I	E	S	M
Template Known Secondary structure														T	T		T	T																		T	T	S	S	S								.	.	.	.	.	.	.															G	G	G								S	S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.
Template SS confidence
	118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.								.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

		183	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure	.								.
Query SS confidence	.								.
Query Sequence	.	H	N	P	T	G	A	D	.	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S
Query Conservation	.								.
Alig confidence	.								.																																															.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.
Template Sequence	V	Q	G	A	S	G	M	I	V	M	P	E	G	Y	L	A	G	V	R	E	L	C	T	T	Y	D	V	L	M	I	V	D	E	V	A	T	G	F	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	.	.	.	.	.	.	L	M	A	A	G	K	G	I	T	G	G	Y	L	P	I	A	V	T	F
Template Known Secondary structure			S	T	T	T						T	T												T	T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	G	T				S	.	.	.	.	.	.						G	G	G	G	T	T	S	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.
Template SS confidence
	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.							.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

	261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.
Template Sequence	A	T	E	D	I	Y	K	A	F	Y	D	D	Y	E	N	L	K	T	F	F	H	G	H	S	Y	T	G	N	Q	L	G	C	A	V	A	L	E	N	L	A	.	.	.	.	.	.	.	.	L	F	E	S	E	N	I	V	E	Q	V	A	E	K	S	K	K	L	H	F	L	L	Q	D	L	H	A	L	P	H	V	G
Template Known Secondary structure								T	T		S		G	G	G									T	T	T	T														.	.	.	.	.	.	.	.					T	T																				T	T	S	T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.
Template SS confidence
	294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.									.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

	341	.	.	.	.	.	.	.	.	350	.	.	.	.	.															.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.				.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.					.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.					.
Query Sequence	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	G	.	.	.	R	M	C	V	.	A	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.					.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.					.
Template Conservation
Template Sequence	D	I	R	Q	L	G	F	M	C	G	A	E	L	V	R	S	K	E	T	K	E	P	Y	P	A	D	R	R	I	G	Y	K	V	S	L	K	M	R	E	L	G	M	L	T	R	P	L	G	D	V	I	A	F	L	P	P	L	A	S	T	A	E	E	L	S	E	M	V	A	I	M	K	Q	A	I
Template Known Secondary structure						T	T								S	B	T	T	T	T	B				G	G	G													T	T							T	T								T	T
Template Predicted Secondary structure
Template SS confidence
	366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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