Job Description P04693 Confidence 100.00% Date Thu Jan 5 10:58:18 GMT 2012 Rank 66 Aligned Residues 364 % Identity 21% Template c3cbfA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alpha-aminodipate aminotransferase; PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27 Resolution 1.67 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		M	F	Q	K	V	D	A	Y	A	G	D	P	I	L	T	L	M	E	R	F	K	E	D	P	R	S	D	K	V	N	L	S	I	G	L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	.	P	H	G	A	S	L	Y	L	P	M	E	G	L	N	C	Y	R	H	A	I
Query Conservation																																																													.
Alig confidence																		.	.	.																.	.	.																							.
Template Conservation																		.	.	.																.	.	.
Template Sequence		F	G	K	G	A	G	R	I	Q	A	S	T	I	R	E	L	.	.	.	L	K	L	T	Q	R	P	G	I	L	S	F	A	G	G	.	.	.	L	P	A	P	E	L	F	P	K	E	E	A	A	E	A	A	A	R	I	L	R	E	K	G	E	V	A	L	Q	Y	S	P	T	E	G	Y	A	P	L	R	A	F	V
Template Known Secondary structure		S																.	.	.					T	S	T	T					S	S		.	.	.				G	G	G	S																					T	S				T	T
Template Predicted Secondary structure																		.	.	.																.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R
Query Conservation
Alig confidence						.	.	.	.	.	.										.	.																.	.																																					.	.	.
Template Conservation						.	.	.	.	.	.										.	.																.	.																																					.	.	.
Template Sequence		A	E	W	I	.	.	.	.	.	.	G	V	R	P	E	E	V	L	I	.	.	T	T	G	S	Q	Q	A	L	D	L	V	G	K	V	F	.	.	L	D	E	G	S	P	V	L	L	E	A	P	S	Y	M	G	A	I	Q	A	F	R	L	Q	G	P	R	F	L	T	V	P	A	G	E	E	.	.	.	G	P	D
Template Known Secondary structure						.	.	.	.	.	.	T	S		G	G	G				.	.		S	S													.	.			T	T								S											T	T											T	T	.	.	.
Template Predicted Secondary structure						.	.	.	.	.	.										.	.																.	.																																					.	.	.
Template SS confidence
		84	.	.	.							.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A
Query Conservation
Alig confidence																								.																																											.
Template Conservation																								.																																											.
Template Sequence		L	D	A	L	E	E	V	L	K	R	E	R	P	R	F	L	Y	L	I	P	S	F	.	Q	N	P	T	G	G	L	T	P	L	P	A	R	K	R	L	L	Q	M	V	M	E	R	G	L	V	V	V	E	D	D	A	Y	R	E	L	Y	F	G	E	A	R	.	L	P	S	L	F	E	L	A	R	E	A	G	Y	P
Template Known Secondary structure															S							B	S	.		T	T	T			B																	T								T	T	T	T		B		S	S			.												T
Template Predicted Secondary structure																								.																																											.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I
Query Conservation
Alig confidence																										.	.	.	.	.	.																																			.	.	.	.	.
Template Conservation																										.	.	.	.	.	.																																			.	.	.	.	.
Template Sequence		G	V	I	Y	L	G	S	F	S	K	V	L	S	P	G	L	R	V	A	F	A	V	A	H	.	.	.	.	.	.	P	E	A	L	Q	K	L	V	Q	A	K	Q	G	A	D	L	H	T	P	M	L	N	Q	M	L	V	H	E	L	L	K	E	G	F	.	.	.	.	.	S	E	R	L	E	R	V	R	R	V	Y
Template Known Secondary structure									S	T	T	T	T		S	T	T									.	.	.	.	.	.																S	S														T	T	T		.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.																																			.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.							.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.						.	.	.	290	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.					.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.													.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																																					.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	M	R	Q	E	L	V	K	V	L	S	T	E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	.	.	.	.	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	A	G	L	N	T
Query Conservation																																					.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.																	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.
Template Sequence		R	E	K	A	Q	A	M	L	H	A	L	D	R	E	V	P	K	E	.	V	R	Y	T	R	P	K	G	G	M	F	V	W	M	E	L	P	K	G	L	S	A	E	G	L	F	R	R	A	L	E	E	N	V	A	F	V	P	G	G	P	F	F	A	N	G	G	G	E	N	T	L	R	L	S	Y	A	T	L	D	R
Template Known Secondary structure																S		T	T	.	S						S	B	S	S								T	T													T	T						S	G	G	G		T	T	S			T	T							S	S	S
Template Predicted Secondary structure																				.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	V	Q	R	V	A	K	A	F	A	A	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	I	A	E	G	V	R	R	L	G	R	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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