Job Description P04693 Confidence 99.95% Date Thu Jan 5 10:58:18 GMT 2012 Rank 115 Aligned Residues 333 % Identity 14% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.							.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.
Query Sequence		L	Y	Y	N	E	D	G	I	I	P	Q	L	Q	A	V	A	E	A	E	A	R	L	N	A	Q	P	H	G	A	S	L	Y	L	P	M	E	G	.	.	.	.	.	.	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L
Query Conservation																																							.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.													.	.	.	.	.	.										.	.
Template Conservation																																																									.	.	.	.	.	.										.	.
Template Sequence		V	H	F	D	A	P	A	G	M	L	I	P	D	S	V	A	T	T	V	S	T	A	F	R	R	S	G	A	S	T	V	G	A	H	P	S	A	R	R	S	A	A	V	L	D	A	A	R	E	A	V	A	D	L	V	.	.	.	.	.	.	N	A	D	P	G	G	V	V	L	.	.	G	A	D	R	A	V	L	L
Template Known Secondary structure					B	G	G	G																					S	S	S		S	S	S																						.	.	.	.	.	.	T			G	G	G				.	.		S
Template Predicted Secondary structure																																																									.	.	.	.	.	.										.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.							.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.
		109	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure									.																		.	.	.	.
Query SS confidence									.																		.	.	.	.
Query Sequence		K	V	G	A	D	F	L	.	K	R	Y	F	P	E	S	G	V	W	V	S	D	P	T	W	E	.	.	.	.	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H
Query Conservation									.																		.	.	.	.
Alig confidence									.																		.	.	.	.																						.																.	.	.
Template Conservation																																																				.																.	.	.
Template Sequence		S	L	L	A	E	A	S	S	S	R	A	G	L	G	Y	E	V	I	V	S	R	L	D	D	E	A	N	I	A	P	W	L	R	A	A	H	R	Y	G	A	K	V	K	W	A	E	V	D	I	E	.	T	G	E	L	P	T	W	Q	W	E	S	L	I	S	K	.	.	.	S	T	R	L	V	A	V	N	S	A	S
Template Known Secondary structure								T	G	G	G	G	B	T	T							T	T	S		G	G	G	T											B										T	T	.	T					G	G	G							T	.	.	.	T								S	B
Template Predicted Secondary structure																																																				.																.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	G	E	R	V	G	G	L	S	V	M	C
Query Conservation
Alig confidence										.	.	.																															.	.	.	.	.	.	.	.	.																						.	.
Template Conservation										.	.	.																															.	.	.	.	.	.	.	.	.																						.	.
Template Sequence		G	T	L	G	G	V	T	D	.	.	.	L	R	A	M	T	K	L	V	H	D	V	G	A	L	V	V	V	D	H	S	A	A	A	P	Y	R	L	L	D	I	.	.	.	.	.	.	.	.	.	R	E	T	D	A	D	V	V	T	V	N	A	H	A	W	G	G	P	P	I	G	.	.	A	M	V	F	R	D	P
Template Known Secondary structure		T	T	T		B	B			.	.	.											T	T								T	T	T	T	T	T						.	.	.	.	.	.	.	.	.						S						G	G	G	G	T	S		S			.	.					S
Template Predicted Secondary structure										.	.	.																															.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		168	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.										.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.
		264	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.										300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure													.	.																										.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																										.	.	.	.	.	.	.	.	.
Query Sequence		E	D	A	E	A	A	G	R	V	L	G	.	.	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P	N	F	G	A	Q	V	V	A	A	V	L	.	.	.	.	.	.	.	.	.	N	D	E	A	L	K	A	S	W	L	A	E	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T
Query Conservation													.	.																										.	.	.	.	.	.	.	.	.
Alig confidence													.	.																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	M	N	S	F	G	S	V	S	T	N	P	Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E	Y	L	A	A	L	D	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A	Y	L	N	R	V	F	D	Y	L	M	V	S	L	R	S
Template Known Secondary structure						T	S					S		T	T			G	G	G	G	G			S																			T	S	S	T	T			S	S																													T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.						.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.																		.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query SS confidence																		.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query Sequence		E	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	.	.	.	.	.	F	S	Y	T	G	L	S	A	A	Q	V	D	R	L	R	E	E	F	G	V	Y	L	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	C	V	.	A	G	L	N	T	A	N	V	Q	R	V
Query Conservation																		.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Alig confidence				.	.	.												.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation				.	.	.
Template Sequence		L	P	.	.	.	L	V	M	L	I	G	R	P	E	A	Q	I	P	V	V	S	F	A	V	H	K	V	P	A	D	R	V	V	Q	R	L	A	D	N	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	V	G	G	A	V	T	V	G	L	A	H	Y	S	T	M	A	E	V	D	Q	L
Template Known Secondary structure			T	.	.	.	T								S	S	B		S							T	T	B												T	T								S								T	T	T	T	T	T									T	T
Template Predicted Secondary structure				.	.	.
Template SS confidence
		314	.				.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	A	F	A	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	A	L	A	S	L
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions