Return to main results Retrieve Phyre Job Id

Job DescriptionP04693
Confidence99.85%DateThu Jan 5 10:58:18 GMT 2012
Rank201Aligned Residues328
% Identity13%Templatec3bs8A_
PDB info PDB header:isomeraseChain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60.........70.........80.........90.........100........
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGAL
Query Conservation 
 
  
             

  
             
    
   

 


               
 
  
 
   

Alig confidence 















..












..





















.........















Template Conservation 

         


  ..
 
  
       ..             


 
    .........     
 
  




 
Template Sequence  IDYVLSWGPLILGHTN. . DRVVESLKKVAEY. . GTSFGAPTEVENELAKLVIDRV. . . . . . . . . PSVEIVRMVSSGTEAT
Template Known Secondary structure  SSGGGTT
TT
BS
....
S

SS

S.........TT
SS
Template Predicted Secondary structure 







....








.........





Template SS confidence 















































































   56...60.........70. ........80.... .....90.........100...... ...110.........120..
 
   109110.........120.........130........ .140.........150.........160........
Predicted Secondary structure 








....................












Query SS confidence 





























. . . . . . . . . . . . . . . . . . . .





























Query Sequence  KVGADFLKRYFPESGVWVSDPTWENHVAIF. . . . . . . . . . . . . . . . . . . . AGAGFEVSTYPWYDEATNGVRFNDLLATLK
Query Conservation        
    


 


  
 
       ....................   
     
                  
 
Alig confidence 





























....................










.......











Template Conservation    


 
    

  

     


     
                              .......  
   

  
 
Template Sequence  MSALRLARGYTGRNKILKFEGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGIAKNTITVP. . . . . . . YNDLESVKLAFQ
Template Known Secondary structure  T

T



S
GGG


SSSS
B
SSTT

TTSSTT.......TT
Template Predicted Secondary structure 






































.......


Template SS confidence 















































































   123......130.........140.........150.........160.........170.........180... ......190.....
 
   169170.........180......... 190.........200.........210.........220.........230.........240.......
Predicted Secondary structure 










.






























Query SS confidence 




















.

























































Query Sequence  TLPARSIVLLHPCCHNPTGAD. LTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSK
Query Conservation          
      



  . 
   
  
   
      

 



            
           
   
 

Alig confidence 




















.
































...











....





Template Conservation        







    
   
    
  
  
    
  

 


  
 
 
 ...  
    

 

....
    
Template Sequence  QFGEDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGFRVDY. . . NCAQGYFGVTPD. . . . LTCLGK
Template Known Secondary structure  GGG
SSB
SSS
B


TTT

TTTTTTTST...TTT


S....
G
Template Predicted Secondary structure 



























...




....
Template SS confidence 















































































   196...200.........210.........220.........230.........240.........250 .........260.. ......
 
   248.250.........260.........270.........280.........290.........300.........310.........320.......
Predicted Secondary structure 




















Query SS confidence 















































































Query Sequence  IFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELV
Query Conservation       
 


  
               
                      
                       
  
 
Alig confidence 


.


















....




























.........














Template Conservation   

.

     
           ....         
        

         .........             
 
Template Sequence  VIG. GGLPVGAYGGKAEIMEQIA. . . . PSGPIYQAGTLSGNPLAMTAGLETLKQLT. . . . . . . . . PDSYKNFIKKGDRLE
Template Known Secondary structure  GGG.TTSS

TTBT....TTSSB



SSTT
T

.........
Template Predicted Secondary structure  .





....










.........
Template SS confidence 















































































   269270. ........280.........290 .........300.........310......... 320.........330....
 
   328.330.........340.........350...... ...360.........370... ..... .380.......
Predicted Secondary structure 














.................



..
.



Query SS confidence 




























. . . . . . . . . . . . . . . . .
















. .




.








Query Sequence  KVLSTEMPERNFDYLLNQRGMFSYTGLSA. . . . . . . . . . . . . . . . . AQVDRLREEFGVYLIAS. . GRMCV. AGLNTANVQ
Query Conservation    
                
 
    
  .................     

 
  
   

.. 


 .
 
    
 
Alig confidence 




























.................
















..




.








Template Conservation    
  
      
  


 
    
                           
   

   
    
       
 



Template Sequence  EGISKAAEAHGIPHTFNRAGSMIGFFFTNEPVINYETAKASDLKLFASYYKGMANEGVFLPPSQFEGLFLSTAHTDEDIE
Template Known Secondary structure  TT


TTSSSS


STTS
TT

SSSSS
B


TT

Template Predicted Secondary structure 


































Template SS confidence 















































































   335....340.........350.........360.........370.........380.........390.........400.........410....
 
   388.390.......
Predicted Secondary structure 
Query SS confidence 









Query Sequence  RVAKAFAAVM
Query Conservation   
  

  

Alig confidence 









Template Conservation       
   
Template Sequence  NTIQAAEKVF
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 









   415....420....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions